Gm20517 Gene Detail

Summary

• Symbol
  Gm20517
• Name
  predicted gene 20517

• Feature Type
  protein coding gene
• IDs
  MGI:5141982
  NCBI Gene: 112694759
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:47922514-47994786 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 23.66 cM

Strain
Comparison

• SNPs within 2kb
  1641 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5141982	protein coding gene	Chr17:47922510-47997664 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0023850	protein coding gene	Chr17:48811131-48892524 (+)
A/J	MGP_AJ_G0023810	protein coding gene	Chr17:47562321-47635823 (+)
AKR/J	MGP_AKRJ_G0023779	protein coding gene	Chr17:47969543-48053979 (+)
BALB/cJ	MGP_BALBcJ_G0023812	protein coding gene	Chr17:47473227-47548099 (+)
C3H/HeJ	MGP_C3HHeJ_G0023575	protein coding gene	Chr17:48704533-48781477 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0024256	protein coding gene	Chr17:50853986-50937663 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0021705	protein coding gene	Chr17:44316908-44393200 (+)
CAST/EiJ	MGP_CASTEiJ_G0023057	protein coding gene	Chr17:48819877-48892886 (+)
CBA/J	MGP_CBAJ_G0023552	protein coding gene	Chr17:52701618-52783782 (+)
DBA/2J	MGP_DBA2J_G0023680	protein coding gene	Chr17:46319093-46391805 (+)
FVB/NJ	MGP_FVBNJ_G0023646	protein coding gene	Chr17:45977749-46049507 (+)
LP/J	MGP_LPJ_G0023760	protein coding gene	Chr17:49466162-49548005 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0023674	protein coding gene	Chr17:52178965-52258235 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0024301	protein coding gene	Chr17:48331007-48407630 (+)
PWK/PhJ	MGP_PWKPhJ_G0022802	protein coding gene	Chr17:45690275-45766157 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0022617	protein coding gene	Chr17:45221925-45293803 (+)
WSB/EiJ	MGP_WSBEiJ_G0023122	protein coding gene	Chr17:48909553-48986191 (+)

Homology

• Gene Tree
  Gm20517
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  4
• UniProt
  1

• Ensembl
  ENSMUSG00000023984 (Evidence)
• NCBI Gene
  112694759

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000023984	Ensembl Gene Model | MGI Sequence Detail	72273	C57BL/6J
transcript	ENSMUST00000132397	Ensembl | MGI Sequence Detail	4807	Not Applicable
polypeptide	ENSMUSP00000117658	Ensembl | MGI Sequence Detail	152	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR013921 Mediator complex, subunit Med20

References

• Summaries
  All 5
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm20517:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr144987	Chr17:47922495-47922544 (+)	6 bp
Tssr144988	Chr17:47922548-47922561 (+)	41 bp