Gm20544 Gene Detail

Summary

• Symbol
  Gm20544
• Name
  predicted gene 20544

• Feature Type
  lncRNA gene
• IDs
  MGI:5142009
  NCBI Gene: 102636262
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr18:75491710-75500159 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 51.06 cM

Strain
Comparison

• SNPs within 2kb
  266 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5142009	lncRNA gene	Chr18:75446742-75500211 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015370	unclassified non-coding RNA gene	Chr18:76065478-76067223 (-)
A/J	MGP_AJ_G0015344	unclassified non-coding RNA gene	Chr18:72739453-72741208 (-)
AKR/J	MGP_AKRJ_G0015308	unclassified non-coding RNA gene	Chr18:74918856-74920593 (-)
BALB/cJ	MGP_BALBcJ_G0015308	unclassified non-coding RNA gene	Chr18:72937064-72938831 (-)
C3H/HeJ	MGP_C3HHeJ_G0015132	unclassified non-coding RNA gene	Chr18:75004449-75006207 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015762	unclassified non-coding RNA gene	Chr18:78053535-78055294 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013503	unclassified non-coding RNA gene	Chr18:71794334-71796011 (-)
CAST/EiJ	MGP_CASTEiJ_G0014683	unclassified non-coding RNA gene	Chr18:75205357-75207138 (-)
CBA/J	MGP_CBAJ_G0015111	unclassified non-coding RNA gene	Chr18:80757027-80758788 (-)
DBA/2J	MGP_DBA2J_G0015206	unclassified non-coding RNA gene	Chr18:72325277-72327035 (-)
FVB/NJ	MGP_FVBNJ_G0015213	unclassified non-coding RNA gene	Chr18:71673723-71675455 (-)
LP/J	MGP_LPJ_G0015286	unclassified non-coding RNA gene	Chr18:75930937-75932682 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015239	unclassified non-coding RNA gene	Chr18:82160438-82162215 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015801	unclassified non-coding RNA gene	Chr18:75036121-75037866 (-)
PWK/PhJ	MGP_PWKPhJ_G0014473	unclassified non-coding RNA gene	Chr18:72717382-72719135 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014260	unclassified non-coding RNA gene	Chr18:75188810-75190569 (-)
WSB/EiJ	MGP_WSBEiJ_G0014790	unclassified non-coding RNA gene	Chr18:74981663-74983408 (-)

Homology

• Gene Tree
  Gm20544
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  15
• Gene trapped
  14
• Transposon induced
  1
• Genomic Mutations
  1 involving Gm20544
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  722
• Tissues
  16
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  149
• RefSeq
  1

• Ensembl
  ENSMUSG00000092569 (Evidence)
• NCBI Gene
  102636262

Representative Sequences			Length	Strain/Species
genomic	102636262	NCBI Gene Model | MGI Sequence Detail	8450	C57BL/6J
transcript	NR_155535	RefSeq | MGI Sequence Detail	2698	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  Primer pair 1

References

• Summaries
  All 11

  Developmental Gene Expression 1

  Phenotypes 6
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22
• Latest
  J:330272 Kong X, et al., LncRNA-Smad7 mediates cross-talk between Nodal/TGF-beta and BMP signaling to regulate cell fate determination of pluripotent and multipotent cells. Nucleic Acids Res. 2022 Oct 14;50(18):10526-10543

TSS for Gm20544:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr153917	Chr18:75500141-75500166 (-)	5 bp
Tssr5373	Chr18:75493252-75493258 (-)	6,904 bp