Gm20561 Pseudogene Detail

Summary

• Symbol
  Gm20561
• Name
  predicted gene, 20561

• Feature Type
  pseudogene
• IDs
  MGI:5295668
  NCBI Gene: 108167674
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:90789959-90790250 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 47.96 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5295668	pseudogene	Chr9:90789955-90790252 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014210	pseudogene	Chr9:91901837-91902128 (-)
A/J	MGP_AJ_G0014227	pseudogene	Chr9:88729518-88729809 (-)
AKR/J	MGP_AKRJ_G0014153	pseudogene	Chr9:90768535-90768826 (-)
BALB/cJ	MGP_BALBcJ_G0014177	pseudogene	Chr9:88344281-88344572 (-)
C3H/HeJ	MGP_C3HHeJ_G0014009	pseudogene	Chr9:91230247-91230538 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014627	pseudogene	Chr9:94447989-94448280 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012640	pseudogene	ChrX:46327588-46327874 (+)
CAST/EiJ	MGP_CASTEiJ_G0013663	pseudogene	Chr9:91018725-91019016 (-)
CBA/J	MGP_CBAJ_G0013991	pseudogene	Chr9:97695773-97696064 (-)
DBA/2J	MGP_DBA2J_G0014075	pseudogene	Chr9:88251319-88251610 (-)
FVB/NJ	MGP_FVBNJ_G0014072	pseudogene	Chr9:87229135-87229426 (-)
LP/J	MGP_LPJ_G0014160	pseudogene	Chr9:92094133-92094424 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014107	pseudogene	Chr9:99416349-99416640 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014598	pseudogene	Chr9:90989962-90990253 (-)
PWK/PhJ	MGP_PWKPhJ_G0013477	pseudogene	Chr9:88414080-88414371 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013266	pseudogene	Chr9:91045195-91045486 (-)
WSB/EiJ	MGP_WSBEiJ_G0013722	pseudogene	Chr9:90899493-90899784 (-)

Homology

• Gene Tree
  Gm20561
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm20561
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000102076 (Evidence)
• NCBI Gene
  108167674

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102076	Ensembl Gene Model | MGI Sequence Detail	292	C57BL/6J
transcript	ENSMUST00000188131	Ensembl | MGI Sequence Detail	292	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;