Gm20605 Gene Detail

Summary

• Symbol
  Gm20605
• Name
  predicted gene 20605

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:5306917
  NCBI Gene: 100316903
• Alliance
  gene page
• Transcription Start Sites
  10 TSS

Location &
Maps

• Sequence Map
  Chr5:137627437-137641161 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 76.59 cM

Strain
Comparison

• SNPs within 2kb
  308 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5306917	protein coding gene	Chr5:137627385-137641161 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0030237	protein coding gene	Chr5:142406337-142420032 (+)
A/J	MGP_AJ_G0030205	protein coding gene	Chr5:136194370-136208560 (+)
AKR/J	MGP_AKRJ_G0030138	protein coding gene	Chr5:140623788-140637312 (+)
BALB/cJ	MGP_BALBcJ_G0030215	protein coding gene	Chr5:137562548-137583029 (+)
C3H/HeJ	MGP_C3HHeJ_G0029931	protein coding gene	Chr5:141276267-141289986 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0030667	protein coding gene	Chr5:147665778-147681004 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0027885	protein coding gene	Chr5:130437691-130451400 (+)
CAST/EiJ	MGP_CASTEiJ_G0029341	protein coding gene	Chr5:140677476-140691176 (+)
CBA/J	MGP_CBAJ_G0029901	protein coding gene	Chr5:153538033-153554984 (+)
DBA/2J	MGP_DBA2J_G0030052	protein coding gene	Chr5:136096074-136109802 (+)
FVB/NJ	MGP_FVBNJ_G0030007	protein coding gene	Chr5:135303649-135317468 (+)
LP/J	MGP_LPJ_G0030141	protein coding gene	Chr5:142878531-142892249 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0030039	protein coding gene	Chr5:156356828-156370542 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0030708	protein coding gene	Chr5:140474570-140488177 (+)
PWK/PhJ	MGP_PWKPhJ_G0029054	protein coding gene	Chr5:135186683-135200562 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0028890	protein coding gene	Chr5:138038600-138057069 (+)
WSB/EiJ	MGP_WSBEiJ_G0029414	protein coding gene	Chr5:141205619-141219146 (+)

Homology

• Gene Tree
  Gm20605
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000029720 (Evidence)
• NCBI Gene
  100316903

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000029720	Ensembl Gene Model | MGI Sequence Detail	13725	C57BL/6J
transcript	ENSMUST00000177545	Ensembl | MGI Sequence Detail	4464	Not Applicable
polypeptide	ENSMUSP00000135286	Ensembl | MGI Sequence Detail	680	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm20605:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49354	Chr5:137627411-137627422 (+)	-20 bp
Tssr49355	Chr5:137627431-137627464 (+)	11 bp
Tssr49356	Chr5:137628357-137628372 (+)	928 bp
Tssr49357	Chr5:137628378-137628385 (+)	945 bp
Tssr49358	Chr5:137629036-137629040 (+)	1,601 bp
Tssr49359	Chr5:137629118-137629145 (+)	1,695 bp
Tssr49360	Chr5:137631827-137631838 (+)	4,396 bp
Tssr49361	Chr5:137635002-137635017 (+)	7,573 bp
Tssr49362	Chr5:137635018-137635068 (+)	7,606 bp
Tssr49363	Chr5:137636744-137636769 (+)	9,320 bp