Gm20635 Gene Detail

Summary

• Symbol
  Gm20635
• Name
  predicted gene 20635

• Feature Type
  lncRNA gene
• IDs
  MGI:5313082
  NCBI Gene: 105242557
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:143377544-143389497 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 82.12 cM

Strain
Comparison

• SNPs within 2kb
  466 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313082	lncRNA gene	Chr5:143376485-143389503 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004216	antisense lncRNA gene	Chr5:148720685-148733527 (-)
A/J	MGP_AJ_G0004194	antisense lncRNA gene	Chr5:142342374-142355396 (-)
AKR/J	MGP_AKRJ_G0004175	antisense lncRNA gene	Chr5:146794470-146807338 (-)
BALB/cJ	MGP_BALBcJ_G0004181	antisense lncRNA gene	Chr5:143588354-143601563 (-)
C3H/HeJ	MGP_C3HHeJ_G0004129	antisense lncRNA gene	Chr5:147610594-147623633 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004330	antisense lncRNA gene	Chr5:154154947-154168303 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003804	antisense lncRNA gene	Chr5:136118061-136131200 (-)
CAST/EiJ	MGP_CASTEiJ_G0004091	antisense lncRNA gene	Chr5:147105418-147119207 (-)
CBA/J	MGP_CBAJ_G0004123	antisense lncRNA gene	Chr5:160511799-160524744 (-)
DBA/2J	MGP_DBA2J_G0004139	antisense lncRNA gene	Chr5:142106573-142119562 (-)
FVB/NJ	MGP_FVBNJ_G0004155	antisense lncRNA gene	Chr5:141315913-141331707 (-)
LP/J	MGP_LPJ_G0004217	antisense lncRNA gene	Chr5:149321830-149335132 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004145	antisense lncRNA gene	Chr5:162902059-162916863 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004327	antisense lncRNA gene	Chr5:146651124-146665350 (-)
PWK/PhJ	MGP_PWKPhJ_G0004044	antisense lncRNA gene	Chr5:141190994-141204124 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003988	antisense lncRNA gene	Chr5:144385443-144402951 (-)
WSB/EiJ	MGP_WSBEiJ_G0004127	antisense lncRNA gene	Chr5:147437640-147452588 (-)

Homology

• Gene Tree
  Gm20635
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000093720 (Evidence)
• NCBI Gene
  105242557

Representative Sequences			Length	Strain/Species
genomic	105242557	NCBI Gene Model | MGI Sequence Detail	11954	C57BL/6J
transcript	AK038791	GenBank | ENA | DDBJ | MGI Sequence Detail	1289	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm20635:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr54370	Chr5:143390995-143391013 (-)	-1,507 bp