Gm20703 Gene Detail

Summary

• Symbol
  Gm20703
• Name
  predicted gene 20703

• Feature Type
  lncRNA gene
• IDs
  MGI:5313150
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr17:71139716-71143189 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 41.87 cM

Strain
Comparison

• SNPs within 2kb
  205 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313150	lncRNA gene	Chr17:71139716-71143189 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003421	antisense lncRNA gene	Chr17:73244362-73245742 (+)
A/J	MGP_AJ_G0003399	antisense lncRNA gene	Chr17:71008054-71009434 (+)
AKR/J	MGP_AKRJ_G0003380	antisense lncRNA gene	Chr17:71988223-71989603 (+)
BALB/cJ	MGP_BALBcJ_G0003388	antisense lncRNA gene	Chr17:70938149-70939529 (+)
C3H/HeJ	MGP_C3HHeJ_G0003338	antisense lncRNA gene	Chr17:72937167-72938547 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003528	antisense lncRNA gene	Chr17:75902946-75904326 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003042	antisense lncRNA gene	Chr17:66797381-66798771 (+)
CAST/EiJ	MGP_CASTEiJ_G0003300	antisense lncRNA gene	Chr17:73365623-73367010 (+)
CBA/J	MGP_CBAJ_G0003334	antisense lncRNA gene	Chr17:79064250-79065630 (+)
DBA/2J	MGP_DBA2J_G0003343	antisense lncRNA gene	Chr17:69701601-69702981 (+)
FVB/NJ	MGP_FVBNJ_G0003361	antisense lncRNA gene	Chr17:69168958-69170338 (+)
LP/J	MGP_LPJ_G0003415	antisense lncRNA gene	Chr17:73994102-73995482 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003349	antisense lncRNA gene	Chr17:78963838-78965218 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003530	antisense lncRNA gene	Chr17:72507222-72508602 (+)
PWK/PhJ	MGP_PWKPhJ_G0003259	antisense lncRNA gene	Chr17:69003642-69005021 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003204	antisense lncRNA gene	Chr17:69219611-69220994 (+)
WSB/EiJ	MGP_WSBEiJ_G0003336	antisense lncRNA gene	Chr17:73306955-73308343 (+)

Homology

• Gene Tree
  Gm20703
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  43
• Gene trapped
  43
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000093622 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093622	Ensembl Gene Model | MGI Sequence Detail	3474	C57BL/6J
transcript	ENSMUST00000245793	Ensembl | MGI Sequence Detail	1799	Not Applicable

References

• Summaries
  All 7

  Phenotypes 5
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm20703:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr145680	Chr17:71141615-71141669 (+)	1,926 bp
Tssr145681	Chr17:71141737-71141744 (+)	2,025 bp
Tssr145682	Chr17:71141937-71141952 (+)	2,229 bp