Gm20708 Gene Detail

Summary

• Symbol
  Gm20708
• Name
  predicted gene 20708

• Feature Type
  protein coding gene
• IDs
  MGI:5313155
• Alliance
  gene page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr11:117700494-117730730 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 82.96 cM

Strain
Comparison

• SNPs within 2kb
  882 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313155	protein coding gene	Chr11:117700494-117730730 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0019452	protein coding gene	Chr11:122091679-122124023 (+)
A/J	MGP_AJ_G0019420	protein coding gene	Chr11:116680674-116712252 (+)
AKR/J	MGP_AKRJ_G0019390	protein coding gene	Chr11:120233018-120266174 (+)
BALB/cJ	MGP_BALBcJ_G0019395	protein coding gene	Chr11:117052583-117083030 (+)
C3H/HeJ	MGP_C3HHeJ_G0019201	protein coding gene	Chr11:120514622-120550222 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0019844	protein coding gene	Chr11:125817878-125849811 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0017470	protein coding gene	Chr11:113689488-113719767 (+)
CAST/EiJ	MGP_CASTEiJ_G0018756	protein coding gene	Chr11:121943422-121973154 (+)
CBA/J	MGP_CBAJ_G0019172	protein coding gene	Chr11:130772062-130805764 (+)
DBA/2J	MGP_DBA2J_G0019284	protein coding gene	Chr11:116081753-116112842 (+)
FVB/NJ	MGP_FVBNJ_G0019276	protein coding gene	Chr11:115701494-115732035 (+)
LP/J	MGP_LPJ_G0019354	protein coding gene	Chr11:122416299-122448028 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0019309	protein coding gene	Chr11:129732288-129763981 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0019883	protein coding gene	Chr11:120882277-120916953 (+)
PWK/PhJ	MGP_PWKPhJ_G0018521	protein coding gene	Chr11:117437517-117470014 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0018313	protein coding gene	Chr11:120613697-120645786 (+)
WSB/EiJ	MGP_WSBEiJ_G0018807	protein coding gene	Chr11:120849214-120880640 (+)

Homology

• Gene Tree
  Gm20708
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000093485 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093485	Ensembl Gene Model | MGI Sequence Detail	30237	C57BL/6J
transcript	ENSMUST00000132298	Ensembl | MGI Sequence Detail	1780	Not Applicable
polypeptide	ENSMUSP00000135368	Ensembl | MGI Sequence Detail	155	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm20708:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr106078	Chr11:117700479-117700511 (+)	1 bp
Tssr106079	Chr11:117700513-117700529 (+)	27 bp
Tssr106080	Chr11:117704118-117704129 (+)	3,630 bp
Tssr106081	Chr11:117704239-117704247 (+)	3,749 bp
Tssr106082	Chr11:117704273-117704290 (+)	3,788 bp
Tssr106083	Chr11:117704484-117704505 (+)	4,001 bp
Tssr106084	Chr11:117704527-117704562 (+)	4,051 bp
Tssr106085	Chr11:117704581-117704592 (+)	4,093 bp
Tssr106086	Chr11:117704641-117704661 (+)	4,157 bp