Gm20717 Gene Detail

Summary

• Symbol
  Gm20717
• Name
  predicted gene 20717

• Feature Type
  lncRNA gene
• IDs
  MGI:5313164
  NCBI Gene: 102632272
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:63970166-63973246 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 28.57 cM

Strain
Comparison

• SNPs within 2kb
  71 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313164	lncRNA gene	Chr15:63969208-63973519 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015296	unclassified non-coding RNA gene	Chr15:63570281-63572850 (+)
A/J	MGP_AJ_G0015271	unclassified non-coding RNA gene	Chr15:61101498-61104069 (+)
AKR/J	MGP_AKRJ_G0015234	unclassified non-coding RNA gene	Chr15:62796164-62798743 (+)
BALB/cJ	MGP_BALBcJ_G0015235	unclassified non-coding RNA gene	Chr15:61323627-61326208 (+)
C3H/HeJ	MGP_C3HHeJ_G0015058	unclassified non-coding RNA gene	Chr15:62961307-62963892 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015689	unclassified non-coding RNA gene	Chr15:66031503-66034072 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013430	unclassified non-coding RNA gene	Chr15:58013272-58016524 (+)
CAST/EiJ	MGP_CASTEiJ_G0014609	unclassified non-coding RNA gene	Chr15:63621644-63624239 (+)
CBA/J	MGP_CBAJ_G0015038	unclassified non-coding RNA gene	Chr15:68264414-68266999 (+)
DBA/2J	MGP_DBA2J_G0015132	unclassified non-coding RNA gene	Chr15:60934064-60936633 (+)
FVB/NJ	MGP_FVBNJ_G0015140	unclassified non-coding RNA gene	Chr15:59975762-59978337 (+)
LP/J	MGP_LPJ_G0015212	unclassified non-coding RNA gene	Chr15:63448324-63450893 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015165	unclassified non-coding RNA gene	Chr15:73251965-73254534 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015728	unclassified non-coding RNA gene	Chr15:63218666-63221233 (+)
PWK/PhJ	MGP_PWKPhJ_G0014400	unclassified non-coding RNA gene	Chr15:61036735-61039322 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014188	unclassified non-coding RNA gene	Chr15:63029382-63031972 (+)
WSB/EiJ	MGP_WSBEiJ_G0014717	unclassified non-coding RNA gene	Chr15:63199969-63202549 (+)

Homology

• Gene Tree
  Gm20717
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  21 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  3
• Radiation induced
  1
• Transposon induced
  2
• Genomic Mutations
  6 involving Gm20717
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  4

• Ensembl
  ENSMUSG00000093695 (Evidence)
• NCBI Gene
  102632272

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093695	Ensembl Gene Model | MGI Sequence Detail	3081	C57BL/6J
transcript	ENSMUST00000176762	Ensembl | MGI Sequence Detail	657	Not Applicable

References

• Summaries
  All 25

  Phenotypes 21
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for Gm20717:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131454	Chr15:63970165-63970200 (+)	17 bp