Gm21816 Pseudogene Detail

Summary

• Symbol
  Gm21816
• Name
  predicted gene, 21816

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5433980
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:77196875-77200023 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  157 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5433980	pseudogene	Chr16:77196875-77200023 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0000918	unclassified gene	Chr16:77509440-77512545 (+)
A/J	MGP_AJ_G0000894	unclassified gene	Chr16:74094216-74097321 (+)
AKR/J	MGP_AKRJ_G0000882	unclassified gene	Chr16:76325560-76328665 (+)
BALB/cJ	MGP_BALBcJ_G0000887	unclassified gene	Chr16:74493075-74496180 (+)
C3H/HeJ	MGP_C3HHeJ_G0000870	unclassified gene	Chr16:76780117-76783222 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0001002	unclassified gene	Chr16:80006505-80009610 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000735	unclassified gene	Chr16:72564715-72567993 (+)
CAST/EiJ	MGP_CASTEiJ_G0000862	unclassified gene	Chr16:77180578-77183691 (+)
CBA/J	MGP_CBAJ_G0000862	unclassified gene	Chr16:83424140-83427245 (+)
DBA/2J	MGP_DBA2J_G0000866	unclassified gene	Chr16:73938206-73941310 (+)
FVB/NJ	MGP_FVBNJ_G0000878	unclassified gene	Chr16:73301894-73304999 (+)
LP/J	MGP_LPJ_G0000921	unclassified gene	Chr16:77260236-77263341 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000870	unclassified gene	Chr16:86567693-86570798 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000996	unclassified gene	Chr16:76659649-76662753 (+)
PWK/PhJ	MGP_PWKPhJ_G0000816	unclassified gene	Chr16:74132076-74135173 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0000789	unclassified gene	Chr16:76269268-76272368 (+)
WSB/EiJ	MGP_WSBEiJ_G0000870	unclassified gene	Chr16:76871441-76874546 (+)

Homology

• Gene Tree
  Gm21816
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  3
• Targeted
  2
• Genomic Mutations
  3 involving Gm21816
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000096870 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000096870	Ensembl Gene Model | MGI Sequence Detail	3149	C57BL/6J
transcript	ENSMUST00000193546	Ensembl | MGI Sequence Detail	3137	Not Applicable

References

• Summaries
  All 8

  Diseases 1

  Phenotypes 7
• Earliest
  J:117029 Davisson M, et al., Impact of trisomy on fertility and meiosis in male mice. Hum Reprod. 2007 Feb;22(2):468-76
• Latest
  J:339533 Duchon A, et al., Multi-influential genetic interactions alter behaviour and cognition through six main biological cascades in Down syndrome mouse models. Hum Mol Genet. 2021 May 28;30(9):771-788

TSS for Gm21816:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139070	Chr16:77196839-77196852 (+)	-29 bp