Gm21917 Gene Detail

Summary

• Symbol
  Gm21917
• Name
  predicted gene, 21917

• Feature Type
  lncRNA gene
• IDs
  MGI:5434081
  NCBI Gene: 102638921
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:99829431-99850631 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  509 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434081	lncRNA gene	Chr15:99829431-99850925 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003312	antisense lncRNA gene	Chr15:101829068-101851649 (+)
A/J	MGP_AJ_G0003288	antisense lncRNA gene	Chr15:97768603-97792427 (+)
AKR/J	MGP_AKRJ_G0003271	antisense lncRNA gene	Chr15:100770282-100789879 (+)
BALB/cJ	MGP_BALBcJ_G0003277	antisense lncRNA gene	Chr15:97937300-97958252 (+)
C3H/HeJ	MGP_C3HHeJ_G0003230	antisense lncRNA gene	Chr15:100835414-100857281 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003419	antisense lncRNA gene	Chr15:105621181-105641729 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002940	antisense lncRNA gene	Chr15:93633657-93635450 (+)
CAST/EiJ	MGP_CASTEiJ_G0003196	antisense lncRNA gene	Chr15:101701808-101722550 (+)
CBA/J	MGP_CBAJ_G0003227	antisense lncRNA gene	Chr15:109226813-109252824 (+)
DBA/2J	MGP_DBA2J_G0003232	antisense lncRNA gene	Chr15:97193730-97214203 (+)
FVB/NJ	MGP_FVBNJ_G0003251	antisense lncRNA gene	Chr15:96190661-96210341 (+)
LP/J	MGP_LPJ_G0003305	antisense lncRNA gene	Chr15:101966206-101989097 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003240	antisense lncRNA gene	Chr15:113092168-113120537 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003421	antisense lncRNA gene	Chr15:100886744-100909350 (+)
PWK/PhJ	MGP_PWKPhJ_G0003154	antisense lncRNA gene	Chr15:97339154-97360312 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003100	antisense lncRNA gene	Chr15:100725394-100750428 (+)
WSB/EiJ	MGP_WSBEiJ_G0003230	antisense lncRNA gene	Chr15:101409954-101432504 (+)

Homology

• Gene Tree
  Gm21917
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  23 phenotype references
  

• All Mutations and Alleles
  25
• Chemically induced (other)
  1
• Gene trapped
  22
• Radiation induced
  2
• Genomic Mutations
  3 involving Gm21917
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000096111 (Evidence)
• NCBI Gene
  102638921

Representative Sequences			Length	Strain/Species
genomic	102638921	NCBI Gene Model | MGI Sequence Detail	21201	C57BL/6J
transcript	XR_003951482	RefSeq | MGI Sequence Detail	1026	C57BL/6J

References

• Summaries
  All 26

  Diseases 1

  Phenotypes 23
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for Gm21917:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr133075	Chr15:99829560-99829576 (+)	137 bp