Gm20760 Pseudogene Detail

Summary

• Symbol
  Gm20760
• Name
  predicted gene, 20760

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5434116
  NCBI Gene: 631415
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:147017199-147017846 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  6

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434116	pseudogene	Chr4:147016853-147018017 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0012750	pseudogene	Chr4:147455618-149390840 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013249	pseudogene	Chr4:155789755-155790390 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0012792	pseudogene	Chr4:144312953-144313527 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0014196	pseudogene	Chr9:105174151-105189632 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0013253	pseudogene	Chr4:147727668-147728438 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm20760
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm20760
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  11
• RefSeq
  2

• Ensembl
  ENSMUSG00000093919 (Evidence)
• NCBI Gene
  631415

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093919	Ensembl Gene Model | MGI Sequence Detail	648	C57BL/6J
transcript	ENSMUST00000179197	Ensembl | MGI Sequence Detail	648	Not Applicable
polypeptide	XP_036020534	RefSeq | MGI Sequence Detail	232	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm20760:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr1375	Chr4:147016874-147016904 (+)	-310 bp
Tssr1376	Chr4:147016960-147016977 (+)	-230 bp