Gm21057 Gene Detail

Summary

• Symbol
  Gm21057
• Name
  predicted gene, 21057

• Feature Type
  lncRNA gene
• IDs
  MGI:5434414
  NCBI Gene: 100859962
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr7:79712458-79725005 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  324 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434414	lncRNA gene	Chr7:79712458-79725015 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004470	antisense lncRNA gene	Chr7:82002370-82016452 (-)
A/J	MGP_AJ_G0004450	antisense lncRNA gene	Chr7:80098092-80110455 (-)
AKR/J	MGP_AKRJ_G0004433	antisense lncRNA gene	Chr7:81826602-81838996 (-)
BALB/cJ	MGP_BALBcJ_G0004435	antisense lncRNA gene	Chr7:79777071-79789401 (-)
C3H/HeJ	MGP_C3HHeJ_G0004384	antisense lncRNA gene	Chr7:82473747-82486691 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004586	antisense lncRNA gene	Chr7:85217961-85233826 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004040	antisense lncRNA gene	Chr7:82613110-82625858 (-)
CAST/EiJ	MGP_CASTEiJ_G0004344	antisense lncRNA gene	Chr7:73347046-73362091 (-)
CBA/J	MGP_CBAJ_G0004379	antisense lncRNA gene	Chr7:88061401-88078614 (-)
DBA/2J	MGP_DBA2J_G0004393	antisense lncRNA gene	Chr7:78650678-78663554 (-)
FVB/NJ	MGP_FVBNJ_G0004410	antisense lncRNA gene	Chr7:78567034-78580949 (-)
LP/J	MGP_LPJ_G0004474	antisense lncRNA gene	Chr7:83246164-83258330 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004400	antisense lncRNA gene	Chr7:88234802-88248375 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004584	antisense lncRNA gene	Chr7:81257572-81270149 (-)
PWK/PhJ	MGP_PWKPhJ_G0004297	antisense lncRNA gene	Chr7:71836086-71848824 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004238	antisense lncRNA gene	Chr7:68265480-68278692 (-)
WSB/EiJ	MGP_WSBEiJ_G0004383	antisense lncRNA gene	Chr7:81596015-81609782 (-)

Homology

• Gene Tree
  Gm21057
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  12 phenotype references
  

• All Mutations and Alleles
  8
• Chemically induced (other)
  1
• Gene trapped
  5
• Radiation induced
  2
• Genomic Mutations
  3 involving Gm21057
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000108714 (Evidence)
• NCBI Gene
  100859962

Representative Sequences			Length	Strain/Species
genomic	100859962	NCBI Gene Model | MGI Sequence Detail	12548	C57BL/6J
transcript	NR_045695	RefSeq | MGI Sequence Detail	522	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 16

  Phenotypes 12
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for Gm21057:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr73203	Chr7:79725013-79725016 (-)	-10 bp
Tssr73202	Chr7:79724622-79724635 (-)	376 bp
Tssr73201	Chr7:79716004-79716008 (-)	8,999 bp