Gm21070 Pseudogene Detail

Summary

• Symbol
  Gm21070
• Name
  predicted gene, 21070

• Feature Type
  pseudogene
• IDs
  MGI:5434425
  NCBI Gene: 100861605
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:12865438-12866422 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  113 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434425	pseudogene	Chr9:12865438-12866422 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014113	pseudogene	Chr9:9823798-9824782 (+)
A/J	MGP_AJ_G0014138	pseudogene	Chr9:9828470-9829454 (+)
AKR/J	MGP_AKRJ_G0014060	pseudogene	Chr9:9777445-9778427 (+)
BALB/cJ	MGP_BALBcJ_G0014088	pseudogene	Chr9:9574437-9575421 (+)
C3H/HeJ	MGP_C3HHeJ_G0013919	pseudogene	Chr9:10082810-10083794 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014531	pseudogene	Chr9:10149371-10150355 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012364	pseudogene	Chr9:9201742-9202729 (+)
CAST/EiJ	MGP_CASTEiJ_G0013575	pseudogene	Chr9:9911594-9912578 (+)
CBA/J	MGP_CBAJ_G0013902	pseudogene	Chr9:10632686-10633670 (+)
DBA/2J	MGP_DBA2J_G0013982	pseudogene	Chr9:9695379-9696363 (+)
FVB/NJ	MGP_FVBNJ_G0013982	pseudogene	Chr9:9342117-9343101 (+)
LP/J	MGP_LPJ_G0014062	pseudogene	Chr9:9887479-9888463 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014010	pseudogene	Chr9:11761920-11762904 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014502	pseudogene	Chr9:9831625-9832609 (+)
PWK/PhJ	MGP_PWKPhJ_G0013387	pseudogene	Chr9:9785886-9786870 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013173	pseudogene	Chr9:9896443-9897427 (+)
WSB/EiJ	MGP_WSBEiJ_G0013631	pseudogene	Chr9:9653400-9654384 (+)

Homology

• Gene Tree
  Gm21070
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000098228 (Evidence)
• NCBI Gene
  100861605

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098228	Ensembl Gene Model | MGI Sequence Detail	985	C57BL/6J
transcript	ENSMUST00000182425	Ensembl | MGI Sequence Detail	985	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm21070:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr83802	Chr9:12865366-12865369 (+)	-70 bp