Gm21392 Pseudogene Detail

Summary

• Symbol
  Gm21392
• Name
  predicted gene, 21392

• Feature Type
  pseudogene
• IDs
  MGI:5434747
  NCBI Gene: 100862003
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:78459676-78460647 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  167 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434747	pseudogene	Chr6:78459676-78460647 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013561	pseudogene	Chr6:79292860-79293831 (+)
A/J	MGP_AJ_G0013545	pseudogene	Chr6:76227286-76228257 (+)
AKR/J	MGP_AKRJ_G0013506	pseudogene	Chr6:78489312-78490283 (+)
BALB/cJ	MGP_BALBcJ_G0013524	pseudogene	Chr6:76286761-76287732 (+)
C3H/HeJ	MGP_C3HHeJ_G0013411	pseudogene	Chr6:105820619-105821590 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013912	pseudogene	Chr6:81427290-81428261 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013066	pseudogene	Chr6:78408649-78409620 (+)
CBA/J	MGP_CBAJ_G0013344	pseudogene	Chr6:84629877-84630848 (+)
DBA/2J	MGP_DBA2J_G0013424	pseudogene	Chr6:75592771-75593742 (+)
FVB/NJ	MGP_FVBNJ_G0013423	pseudogene	Chr6:74863048-74864019 (+)
LP/J	MGP_LPJ_G0013497	pseudogene	Chr6:79207784-79208755 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013434	pseudogene	Chr6:88635823-88636794 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013903	pseudogene	Chr6:78296845-78297805 (+)
PWK/PhJ	MGP_PWKPhJ_G0012872	pseudogene	Chr6:74535233-74536193 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012654	pseudogene	Chr6:77129773-77130744 (+)
WSB/EiJ	MGP_WSBEiJ_G0013117	pseudogene	Chr6:78712323-78713294 (+)

Homology

• Gene Tree
  Gm21392
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm21392
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000097940 (Evidence)
• NCBI Gene
  100862003

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097940	Ensembl Gene Model | MGI Sequence Detail	972	C57BL/6J
transcript	ENSMUST00000182950	Ensembl | MGI Sequence Detail	972	Not Applicable

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48