Gm21451 Pseudogene Detail

Summary

• Symbol
  Gm21451
• Name
  predicted gene, 21451

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5434806
  NCBI Gene: 100862072
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:69628303-69717736 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434806	pseudogene	Chr14:69627810-69729986 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039797	pseudogene	Chr14:64169286-64261663 (+)
A/J	MGP_AJ_G0039796	pseudogene	Chr14:62649590-62945333 (+)
AKR/J	MGP_AKRJ_G0039723	pseudogene	Chr14:64743139-64828519 (+)
BALB/cJ	MGP_BALBcJ_G0039770	pseudogene	Chr14:62624376-62705629 (+)
C3H/HeJ	MGP_C3HHeJ_G0039425	pseudogene	Chr14:64469874-64551551 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040334	pseudogene	Chr14:67090209-67177942 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036950	pseudogene	Chr14:60709246-60791618 (+)
CAST/EiJ	MGP_CASTEiJ_G0038541	pseudogene	Chr14:61010636-61100586 (+)
CBA/J	MGP_CBAJ_G0039398	pseudogene	Chr14:69185968-69275050 (+)
DBA/2J	MGP_DBA2J_G0039596	pseudogene	Chr14:62248043-62329732 (+)
FVB/NJ	MGP_FVBNJ_G0039553	pseudogene	Chr14:61664520-61747733 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0039554	pseudogene	Chr14:68130814-68216878 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040436	pseudogene	Chr14:64007905-64091709 (+)
PWK/PhJ	MGP_PWKPhJ_G0038220	pseudogene	Chr14:58997700-59083684 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037962	pseudogene	Chr14:59930410-60023027 (+)
WSB/EiJ	MGP_WSBEiJ_G0038774	pseudogene	Chr14:64306990-64389289 (+)

Homology

• Gene Tree
  Gm21451
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm21451
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  14

• Ensembl
  ENSMUSG00000094526 (Evidence)
• NCBI Gene
  100862072

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000094526	Ensembl Gene Model | MGI Sequence Detail	89434	C57BL/6J
transcript	ENSMUST00000111062	Ensembl | MGI Sequence Detail	2775	Not Applicable
polypeptide	XP_006519955	RefSeq | MGI Sequence Detail	748	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm21451:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr164707	Chr14:69713046-69713048 (+)	84,744 bp
Tssr164708	Chr14:69713273-69713287 (+)	84,977 bp