Gm21542 Pseudogene Detail

Summary

• Symbol
  Gm21542
• Name
  predicted gene, 21542

• Feature Type
  pseudogene
• IDs
  MGI:5434897
  NCBI Gene: 100862178
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr19:23643955-23644947 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  159 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5434897	pseudogene	Chr19:23643955-23644947 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011481	pseudogene	Chr19:21835907-21836871 (+)
A/J	MGP_AJ_G0011480	pseudogene	Chr19:20643165-20644154 (+)
AKR/J	MGP_AKRJ_G0011445	pseudogene	Chr19:21440068-21441057 (+)
BALB/cJ	MGP_BALBcJ_G0011460	pseudogene	Chr19:20683805-20684769 (+)
C3H/HeJ	MGP_C3HHeJ_G0011348	pseudogene	Chr19:21389638-21390596 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011752	pseudogene	Chr19:22534600-22535592 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010296	pseudogene	Chr19:20824096-20825057 (+)
CAST/EiJ	MGP_CASTEiJ_G0011146	pseudogene	Chr19:21117097-21118089 (+)
CBA/J	MGP_CBAJ_G0011317	pseudogene	Chr19:23517742-23518700 (+)
DBA/2J	MGP_DBA2J_G0011373	pseudogene	Chr19:20653119-20654077 (+)
FVB/NJ	MGP_FVBNJ_G0011379	pseudogene	Chr19:20512732-20513696 (+)
LP/J	MGP_LPJ_G0011442	pseudogene	Chr19:21783552-21784516 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011375	pseudogene	Chr19:23572872-23573864 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011737	pseudogene	Chr19:21423651-21424609 (+)
PWK/PhJ	MGP_PWKPhJ_G0011004	pseudogene	Chr19:20242257-20243219 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010830	pseudogene	Chr19:20656912-20657876 (+)
WSB/EiJ	MGP_WSBEiJ_G0011174	pseudogene	Chr19:21457226-21458218 (+)

Homology

• Gene Tree
  Gm21542
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000098010 (Evidence)
• NCBI Gene
  100862178

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098010	Ensembl Gene Model | MGI Sequence Detail	993	C57BL/6J
transcript	ENSMUST00000182307	Ensembl | MGI Sequence Detail	993	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;