Gm21981 Gene Detail

Summary

• Symbol
  Gm21981
• Name
  predicted gene 21981

• Feature Type
  protein coding gene
• IDs
  MGI:5439450
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:47997664-48005380 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic

Strain
Comparison

• SNPs within 2kb
  198 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5439450	protein coding gene	Chr17:47997664-48005380 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0023853	protein coding gene	Chr17:48896552-48904257 (-)
A/J	MGP_AJ_G0023813	protein coding gene	Chr17:47638750-47646464 (-)
AKR/J	MGP_AKRJ_G0023782	protein coding gene	Chr17:48056896-48064607 (-)
BALB/cJ	MGP_BALBcJ_G0023815	protein coding gene	Chr17:47551776-47559491 (-)
C3H/HeJ	MGP_C3HHeJ_G0023578	protein coding gene	Chr17:48784386-48792104 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0024259	protein coding gene	Chr17:50940584-50948303 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0021708	protein coding gene	Chr17:44396240-44403951 (-)
CAST/EiJ	MGP_CASTEiJ_G0023060	protein coding gene	Chr17:48895764-48903515 (-)
CBA/J	MGP_CBAJ_G0023555	protein coding gene	Chr17:52786691-52794544 (-)
DBA/2J	MGP_DBA2J_G0023683	protein coding gene	Chr17:46394713-46402430 (-)
FVB/NJ	MGP_FVBNJ_G0023649	protein coding gene	Chr17:46052389-46060333 (-)
LP/J	MGP_LPJ_G0023763	protein coding gene	Chr17:49550902-49558654 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0023677	protein coding gene	Chr17:52262140-52269860 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0024304	protein coding gene	Chr17:48410608-48418438 (-)
PWK/PhJ	MGP_PWKPhJ_G0022805	protein coding gene	Chr17:45769029-45776887 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0022620	protein coding gene	Chr17:45296743-45304497 (-)
WSB/EiJ	MGP_WSBEiJ_G0023125	protein coding gene	Chr17:48990282-49001357 (-)

Homology

• Gene Tree
  Gm21981
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000079444 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000079444	Ensembl Gene Model | MGI Sequence Detail	7717	C57BL/6J
transcript	ENSMUST00000143789	Ensembl | MGI Sequence Detail	2721	Not Applicable
polypeptide	ENSMUSP00000119045	Ensembl | MGI Sequence Detail	369	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm21981:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr148455	Chr17:48001817-48001822 (-)	3,560 bp