Gm21984 Gene Detail

Summary

• Symbol
  Gm21984
• Name
  predicted gene 21984
• Synonyms
  ln-CR3

• Feature Type
  lncRNA gene
• IDs
  MGI:5439453
• Alliance
  gene page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr7:126541316-126552045 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  262 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5439453	lncRNA gene	Chr7:126541316-126552045 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015691	unclassified non-coding RNA gene	Chr7:131252476-131264543 (+)
A/J	MGP_AJ_G0015669	unclassified non-coding RNA gene	Chr7:127769821-127780517 (+)
AKR/J	MGP_AKRJ_G0015632	unclassified non-coding RNA gene	Chr7:131003915-131014474 (+)
BALB/cJ	MGP_BALBcJ_G0015630	unclassified non-coding RNA gene	Chr7:127432899-127443606 (+)
C3H/HeJ	MGP_C3HHeJ_G0015452	unclassified non-coding RNA gene	Chr7:130943387-130956296 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016085	unclassified non-coding RNA gene	Chr7:136357512-136368188 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013814	unclassified non-coding RNA gene	Chr7:128979077-128990114 (+)
CAST/EiJ	MGP_CASTEiJ_G0015007	unclassified non-coding RNA gene	Chr7:122731631-122742343 (+)
CBA/J	MGP_CBAJ_G0015433	unclassified non-coding RNA gene	Chr7:140943744-140954416 (+)
DBA/2J	MGP_DBA2J_G0015529	unclassified non-coding RNA gene	Chr7:125744040-125754591 (+)
FVB/NJ	MGP_FVBNJ_G0015535	unclassified non-coding RNA gene	Chr7:125594086-125604988 (+)
LP/J	MGP_LPJ_G0015609	unclassified non-coding RNA gene	Chr7:132716922-132728875 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015557	unclassified non-coding RNA gene	Chr7:142111553-142122270 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016127	unclassified non-coding RNA gene	Chr7:130019559-130030669 (+)
PWK/PhJ	MGP_PWKPhJ_G0014789	unclassified non-coding RNA gene	Chr7:118739323-118750185 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014578	unclassified non-coding RNA gene	Chr7:116859189-116869850 (+)
WSB/EiJ	MGP_WSBEiJ_G0015112	unclassified non-coding RNA gene	Chr7:130996124-131006832 (+)

Homology

• Gene Tree
  Gm21984
  

Human Diseases

• References
  3 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  36 phenotype references
  

• All Mutations and Alleles
  5
• Targeted
  5
• Genomic Mutations
  5 involving Gm21984
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000095334 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000095334	Ensembl Gene Model | MGI Sequence Detail	10730	C57BL/6J
transcript	ENSMUST00000123117	Ensembl | MGI Sequence Detail	822	Not Applicable

References

• Summaries
  All 39

  Developmental Gene Expression 1

  Diseases 3

  Phenotypes 36
• Earliest
  J:176335 Horev G, et al., Dosage-dependent phenotypes in models of 16p11.2 lesions found in autism. Proc Natl Acad Sci U S A. 2011 Oct 11;108(41):17076-81
• Latest
  J:349484 Henis M, et al., The autism susceptibility kinase, TAOK2, phosphorylates eEF2 and modulates translation. Sci Adv. 2024 Apr 12;10(15):eadf7001

TSS for Gm21984:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr69114	Chr7:126540532-126540574 (+)	-763 bp
Tssr69115	Chr7:126541140-126541146 (+)	-173 bp
Tssr69116	Chr7:126541209-126541225 (+)	-99 bp
Tssr69117	Chr7:126541232-126541246 (+)	-77 bp
Tssr69118	Chr7:126541253-126541264 (+)	-57 bp
Tssr69119	Chr7:126541280-126541291 (+)	-30 bp
Tssr69120	Chr7:126541311-126541331 (+)	5 bp
Tssr69121	Chr7:126544284-126544311 (+)	2,982 bp
Tssr69122	Chr7:126544372-126544387 (+)	3,064 bp