Gm22106 Gene Detail

Summary

• Symbol
  Gm22106
• Name
  predicted gene, 22106

• Feature Type
  snRNA gene
  BioType Conflict
  
• IDs
  MGI:5451883
  NCBI Gene: 115488577
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr15:73601013-73601139 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5451883	snRNA gene	Chr15:73601013-73601139 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037532	snRNA gene	Chr15:73487507-73487633 (+)
A/J	MGP_AJ_G0037529	snRNA gene	Chr15:70858781-70858907 (+)
AKR/J	MGP_AKRJ_G0037467	snRNA gene	Chr15:72663561-72663687 (+)
BALB/cJ	MGP_BALBcJ_G0037514	snRNA gene	Chr15:70863597-70863723 (+)
C3H/HeJ	MGP_C3HHeJ_G0037192	snRNA gene	Chr15:72817423-72817549 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0038033	snRNA gene	Chr15:76277542-76277668 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034993	snRNA gene	Chr15:67279435-67279564 (+)
CAST/EiJ	MGP_CASTEiJ_G0036363	snRNA gene	Chr15:73618802-73618928 (+)
CBA/J	MGP_CBAJ_G0037164	snRNA gene	Chr15:78769067-78769193 (+)
DBA/2J	MGP_DBA2J_G0037343	snRNA gene	Chr15:70457258-70457384 (+)
FVB/NJ	MGP_FVBNJ_G0037288	snRNA gene	Chr15:69478454-69478580 (+)
LP/J	MGP_LPJ_G0037391	snRNA gene	Chr15:73510269-73510395 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0037301	snRNA gene	Chr15:84124313-84124439 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0038147	snRNA gene	Chr15:73058519-73058645 (+)
PWK/PhJ	MGP_PWKPhJ_G0036055	snRNA gene	Chr15:70556473-70556599 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035845	snRNA gene	Chr15:72950552-72950678 (+)
WSB/EiJ	MGP_WSBEiJ_G0036573	snRNA gene	Chr15:73061059-73061185 (+)

Homology

• Gene Tree
  Gm22106
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  15 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm22106
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000084493 (Evidence)
• NCBI Gene
  115488577

Representative Sequences			Length	Strain/Species
genomic	115488577	NCBI Gene Model | MGI Sequence Detail	127	C57BL/6J

References

• Summaries
  All 18

  Phenotypes 15
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for Gm22106:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131541	Chr15:73599539-73599563 (+)	-1,462 bp
Tssr131542	Chr15:73600997-73601016 (+)	-6 bp