Gm22442 Gene Detail

Summary

• Symbol
  Gm22442
• Name
  predicted gene, 22442

• Feature Type
  snoRNA gene
• IDs
  MGI:5452219
  NCBI Gene: 115487906
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:69241344-69241487 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  77 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5452219	snoRNA gene	Chr11:69241344-69241487 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036814	snoRNA gene	Chr11:69774687-69774830 (-)
A/J	MGP_AJ_G0036802	snoRNA gene	Chr11:67149198-67149341 (-)
AKR/J	MGP_AKRJ_G0036751	snoRNA gene	Chr11:69158691-69158834 (-)
BALB/cJ	MGP_BALBcJ_G0036793	snoRNA gene	Chr11:67467958-67468101 (-)
C3H/HeJ	MGP_C3HHeJ_G0036479	snoRNA gene	Chr11:69172796-69172939 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037307	snoRNA gene	Chr11:71891294-71891437 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0036454	snoRNA gene	Chr11:75103249-75103392 (-)
DBA/2J	MGP_DBA2J_G0036630	snoRNA gene	Chr11:66743265-66743408 (-)
FVB/NJ	MGP_FVBNJ_G0036583	snoRNA gene	Chr11:66367493-66367636 (-)
LP/J	MGP_LPJ_G0036677	snoRNA gene	Chr11:70346295-70346438 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036588	snoRNA gene	Chr11:75720583-75720726 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037421	snoRNA gene	Chr11:69407431-69407574 (-)
PWK/PhJ	MGP_PWKPhJ_G0035362	snoRNA gene	Chr11:67382816-67382959 (-)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm22442
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000087881 (Evidence)
• NCBI Gene
  115487906

Representative Sequences			Length	Strain/Species
genomic	115487906	NCBI Gene Model | MGI Sequence Detail	144	C57BL/6J
transcript	XR_004937368	RefSeq | MGI Sequence Detail	144	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm22442:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr108634	Chr11:69241541-69241545 (-)	-56 bp