Snora9 Gene Detail

Summary

• Symbol
  Snora9
• Name
  small nucleolar RNA, H/ACA box 9
• Synonyms
  Gm22457

• Feature Type
  snoRNA gene
• IDs
  MGI:5452234
  NCBI Gene: 115487884
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:6478033-6478165 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  108 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5452234	snoRNA gene	Chr11:6478033-6478165 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0038541	snoRNA gene	Chr11:3669554-3669686 (-)
A/J	MGP_AJ_G0038531	snoRNA gene	Chr11:3505679-3505811 (-)
AKR/J	MGP_AKRJ_G0038469	snoRNA gene	Chr11:3692924-3693056 (-)
BALB/cJ	MGP_BALBcJ_G0038518	snoRNA gene	Chr11:3517552-3517684 (-)
C3H/HeJ	MGP_C3HHeJ_G0038181	snoRNA gene	Chr11:3556805-3556937 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0039056	snoRNA gene	Chr11:3760121-3760253 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0037325	snoRNA gene	Chr11:3558510-3558642 (-)
CBA/J	MGP_CBAJ_G0038153	snoRNA gene	Chr11:4189011-4189143 (-)
DBA/2J	MGP_DBA2J_G0038343	snoRNA gene	Chr11:3408468-3408600 (-)
FVB/NJ	MGP_FVBNJ_G0038294	snoRNA gene	Chr11:3441725-3441857 (-)
LP/J	MGP_LPJ_G0038383	snoRNA gene	Chr11:3739141-3739273 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038293	snoRNA gene	Chr11:3736532-3736664 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039165	snoRNA gene	Chr11:3700293-3700425 (-)
PWK/PhJ	MGP_PWKPhJ_G0037011	snoRNA gene	Chr11:3455971-3456103 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0036767	snoRNA gene	Chr11:3640784-3640916 (-)
WSB/EiJ	MGP_WSBEiJ_G0037556	snoRNA gene	Chr11:3523887-3524019 (-)

Homology

• Gene Tree
  Snora9
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000064513 (Evidence)
• NCBI Gene
  115487884

Representative Sequences			Length	Strain/Species
genomic	115487884	NCBI Gene Model | MGI Sequence Detail	133	C57BL/6J
transcript	XR_004937332	RefSeq | MGI Sequence Detail	133	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Snora9:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr106736	Chr11:6478441-6478462 (-)	-287 bp
Tssr106735	Chr11:6478420-6478433 (-)	-262 bp
Tssr106734	Chr11:6478394-6478403 (-)	-234 bp