Gm22479 Gene Detail

Summary

• Symbol
  Gm22479
• Name
  predicted gene, 22479

• Feature Type
  snRNA gene
  BioType Conflict
  
• IDs
  MGI:5452256
  NCBI Gene: 115487323
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:118296052-118296132 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  60 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5452256	snRNA gene	Chr9:118296011-118296132 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0038287	snRNA gene	Chr9:121145050-121145130 (-)
A/J	MGP_AJ_G0038280	snRNA gene	Chr9:116670811-116670891 (-)
AKR/J	MGP_AKRJ_G0038219	snRNA gene	Chr9:119680762-119680842 (-)
BALB/cJ	MGP_BALBcJ_G0038265	snRNA gene	Chr9:116535770-116535850 (-)
C3H/HeJ	MGP_C3HHeJ_G0037932	snRNA gene	Chr9:120162367-120162447 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0038801	snRNA gene	Chr9:124456973-124457053 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035606	snRNA gene	Chr9:113876972-113877052 (-)
CAST/EiJ	MGP_CASTEiJ_G0037081	snRNA gene	Chr9:120112918-120112998 (-)
CBA/J	MGP_CBAJ_G0037902	snRNA gene	Chr9:129130605-129130685 (-)
DBA/2J	MGP_DBA2J_G0038093	snRNA gene	Chr9:116115161-116115241 (-)
FVB/NJ	MGP_FVBNJ_G0038041	snRNA gene	Chr9:114950659-114950739 (-)
LP/J	MGP_LPJ_G0038133	snRNA gene	Chr9:121494955-121495035 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038041	snRNA gene	Chr9:130176859-130176939 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0038908	snRNA gene	Chr9:120067547-120067627 (-)
PWK/PhJ	MGP_PWKPhJ_G0036772	snRNA gene	Chr9:116494637-116494717 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0036535	snRNA gene	Chr9:120152708-120152788 (-)
WSB/EiJ	MGP_WSBEiJ_G0037308	snRNA gene	Chr9:119963933-119964013 (-)

Homology

• Gene Tree
  Gm22479
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000084515 (Evidence)
• NCBI Gene
  115487323

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084515	Ensembl Gene Model | MGI Sequence Detail	81	C57BL/6J
transcript	ENSMUST00000122566	Ensembl | MGI Sequence Detail	81	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm22479:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr91956	Chr9:118296129-118296133 (-)	1 bp