Gm22606 Gene Detail

Summary

• Symbol
  Gm22606
• Name
  predicted gene, 22606

• Feature Type
  snRNA gene
• IDs
  MGI:5452383
  NCBI Gene: 115489581
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:79178709-79178811 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5452383	snRNA gene	Chr2:79178709-79178811 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037747	snRNA gene	Chr2:79890871-79890973 (+)
A/J	MGP_AJ_G0037735	snRNA gene	Chr2:76802591-76802693 (+)
AKR/J	MGP_AKRJ_G0037674	snRNA gene	Chr2:78813594-78813696 (+)
BALB/cJ	MGP_BALBcJ_G0037718	snRNA gene	Chr2:76928478-76928580 (+)
C3H/HeJ	MGP_C3HHeJ_G0037393	snRNA gene	Chr2:79038231-79038333 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0038244	snRNA gene	Chr2:82258966-82259068 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035156	snRNA gene	Chr2:74053691-74053791 (+)
CAST/EiJ	MGP_CASTEiJ_G0036555	snRNA gene	Chr2:79458611-79458713 (+)
CBA/J	MGP_CBAJ_G0037367	snRNA gene	Chr2:85204277-85204379 (+)
DBA/2J	MGP_DBA2J_G0037549	snRNA gene	Chr2:76354538-76354640 (+)
FVB/NJ	MGP_FVBNJ_G0037495	snRNA gene	Chr2:75722819-75722921 (+)
LP/J	MGP_LPJ_G0037600	snRNA gene	Chr2:79735923-79736025 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0037509	snRNA gene	Chr2:87054419-87054520 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0038355	snRNA gene	Chr2:78985312-78985414 (+)
PWK/PhJ	MGP_PWKPhJ_G0036251	snRNA gene	Chr2:76299892-76299993 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0036771	snRNA gene	Chr2:79611403-79611505 (+)

Homology

• Gene Tree
  Gm22606
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Genomic Mutations
  2 involving Gm22606
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000088915 (Evidence)
• NCBI Gene
  115489581

Representative Sequences			Length	Strain/Species
genomic	115489581	NCBI Gene Model | MGI Sequence Detail	103	C57BL/6J
transcript	XR_004941152	RefSeq | MGI Sequence Detail	103	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087