Gm22642 Gene Detail

Summary

• Symbol
  Gm22642
• Name
  predicted gene, 22642

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:5452419
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:89209785-89210036 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5452419	unclassified non-coding RNA gene	Chr3:89209785-89210036 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0009681	unclassified non-coding RNA gene	Chr3:89511368-89511619 (+)
A/J	MGP_AJ_G0009667	unclassified non-coding RNA gene	Chr3:86548659-86548910 (+)
AKR/J	MGP_AKRJ_G0009650	unclassified non-coding RNA gene	Chr3:88639942-88640193 (+)
BALB/cJ	MGP_BALBcJ_G0009649	unclassified non-coding RNA gene	Chr3:86515059-86515310 (+)
C3H/HeJ	MGP_C3HHeJ_G0009582	unclassified non-coding RNA gene	Chr3:88843575-88843826 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0009891	unclassified non-coding RNA gene	Chr3:92897870-92898121 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0009402	unclassified non-coding RNA gene	Chr3:89200972-89201223 (+)
CBA/J	MGP_CBAJ_G0009555	unclassified non-coding RNA gene	Chr3:96078427-96078678 (+)
DBA/2J	MGP_DBA2J_G0009583	unclassified non-coding RNA gene	Chr3:85926551-85926802 (+)
FVB/NJ	MGP_FVBNJ_G0009600	unclassified non-coding RNA gene	Chr3:84268367-84268618 (+)
LP/J	MGP_LPJ_G0009677	unclassified non-coding RNA gene	Chr3:90588723-90588974 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009568	unclassified non-coding RNA gene	Chr3:102294154-102294405 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0009864	unclassified non-coding RNA gene	Chr3:88393573-88393824 (+)
PWK/PhJ	MGP_PWKPhJ_G0009325	unclassified non-coding RNA gene	Chr3:85801987-85802243 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0009502	unclassified non-coding RNA gene	Chr3:88789189-88789440 (+)

Homology

• Gene Tree
  Gm22642
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm22642
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000093093 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093093	Ensembl Gene Model | MGI Sequence Detail	252	C57BL/6J
transcript	ENSMUST00000175352	Ensembl | MGI Sequence Detail	252	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;