Gm22840 Gene Detail

Summary

• Symbol
  Gm22840
• Name
  predicted gene, 22840

• Feature Type
  snoRNA gene
• IDs
  MGI:5452617
  NCBI Gene: 115486335
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:93867596-93867731 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  88 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5452617	snoRNA gene	Chr6:93867596-93867731 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039335	snoRNA gene	Chr6:95618601-95618736 (+)
A/J	MGP_AJ_G0039331	snoRNA gene	Chr6:91983874-91984009 (+)
AKR/J	MGP_AKRJ_G0039259	snoRNA gene	Chr6:94514438-94514573 (+)
BALB/cJ	MGP_BALBcJ_G0039313	snoRNA gene	Chr6:91939856-91939991 (+)
C3H/HeJ	MGP_C3HHeJ_G0038968	snoRNA gene	Chr6:89916220-89916355 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0039860	snoRNA gene	Chr6:98039866-98040001 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038105	snoRNA gene	Chr6:94682388-94682523 (+)
CBA/J	MGP_CBAJ_G0038944	snoRNA gene	Chr6:101736444-101736579 (+)
DBA/2J	MGP_DBA2J_G0039129	snoRNA gene	Chr6:91135596-91135731 (+)
FVB/NJ	MGP_FVBNJ_G0039086	snoRNA gene	Chr6:90357417-90357552 (+)
LP/J	MGP_LPJ_G0039174	snoRNA gene	Chr6:95581938-95582073 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039088	snoRNA gene	Chr6:105714753-105714888 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039959	snoRNA gene	Chr6:94388381-94388516 (+)
PWK/PhJ	MGP_PWKPhJ_G0037786	snoRNA gene	Chr6:90129577-90129712 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037538	snoRNA gene	Chr6:93316993-93317128 (+)
WSB/EiJ	MGP_WSBEiJ_G0038332	snoRNA gene	Chr6:94845571-94845706 (+)

Homology

• Gene Tree
  Gm22840
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm22840
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000089069 (Evidence)
• NCBI Gene
  115486335

Representative Sequences			Length	Strain/Species
genomic	115486335	NCBI Gene Model | MGI Sequence Detail	136	C57BL/6J
transcript	XR_004933892	RefSeq | MGI Sequence Detail	136	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:87486 Akeson EC, Chromosomal inversion discovered in C3H/HeJ mice. JAX Notes. 2003;491:15
• Latest
  J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)