Gm22847 Gene Detail

Summary

• Symbol
  Gm22847
• Name
  predicted gene, 22847

• Feature Type
  snRNA gene
  BioType Conflict
  
• IDs
  MGI:5452624
  NCBI Gene: 115490302
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:34687993-34688097 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  83 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5452624	snRNA gene	Chr5:34687993-34688106 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037980	snRNA gene	Chr5:32774362-32774466 (+)
A/J	MGP_AJ_G0037967	snRNA gene	Chr5:31689239-31689343 (+)
AKR/J	MGP_AKRJ_G0037906	snRNA gene	Chr5:32913857-32913961 (+)
BALB/cJ	MGP_BALBcJ_G0037952	snRNA gene	Chr5:32224849-32224953 (+)
C3H/HeJ	MGP_C3HHeJ_G0037626	snRNA gene	Chr5:32950406-32950510 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0038482	snRNA gene	Chr5:34662318-34662422 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035354	snRNA gene	Chr5:29468335-29468440 (+)
CAST/EiJ	MGP_CASTEiJ_G0036786	snRNA gene	Chr5:32012749-32012853 (+)
CBA/J	MGP_CBAJ_G0037599	snRNA gene	Chr5:35436687-35436791 (+)
DBA/2J	MGP_DBA2J_G0037783	snRNA gene	Chr5:31859707-31859811 (+)
FVB/NJ	MGP_FVBNJ_G0037729	snRNA gene	Chr5:31300823-31300927 (+)
LP/J	MGP_LPJ_G0037829	snRNA gene	Chr5:33190168-33190272 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0037740	snRNA gene	Chr5:36297207-36297311 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0038594	snRNA gene	Chr5:32421925-32422029 (+)
PWK/PhJ	MGP_PWKPhJ_G0036476	snRNA gene	Chr5:31002978-31003082 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0036250	snRNA gene	Chr5:31857617-31857721 (+)
WSB/EiJ	MGP_WSBEiJ_G0037000	snRNA gene	Chr5:32499548-32499652 (+)

Homology

• Gene Tree
  Gm22847
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  17 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (ENU)
  1
• Radiation induced
  5
• Genomic Mutations
  6 involving Gm22847
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000088332 (Evidence)
• NCBI Gene
  115490302

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000088332	Ensembl Gene Model | MGI Sequence Detail	105	C57BL/6J
transcript	ENSMUST00000157707	Ensembl | MGI Sequence Detail	105	Not Applicable

References

• Summaries
  All 20

  Diseases 1

  Phenotypes 17
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

TSS for Gm22847:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr45879	Chr5:34687992-34687995 (+)	1 bp