Gm23123 Gene Detail

Summary

• Symbol
  Gm23123
• Name
  predicted gene, 23123

• Feature Type
  snoRNA gene
• IDs
  MGI:5452900
  NCBI Gene: 115488841
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:26442476-26442619 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  150 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5452900	snoRNA gene	Chr17:26442476-26442619 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039443	snoRNA gene	Chr8:32152994-32154172 (+)
A/J	MGP_AJ_G0039444	snoRNA gene	Chr8:30926086-30926229 (+)
AKR/J	MGP_AKRJ_G0039366	snoRNA gene	Chr8:31892054-31892197 (+)
BALB/cJ	MGP_BALBcJ_G0039421	snoRNA gene	Chr8:31046037-31046180 (+)
C3H/HeJ	MGP_C3HHeJ_G0039081	snoRNA gene	Chr8:32214895-32215038 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038213	snoRNA gene	Chr8:31647183-31654299 (+)
CBA/J	MGP_CBAJ_G0039050	snoRNA gene	Chr8:34695319-34697947 (+)
DBA/2J	MGP_DBA2J_G0039238	snoRNA gene	Chr8:30903494-30903637 (+)
FVB/NJ	MGP_FVBNJ_G0038313	snoRNA gene	Chr11:37253104-37253247 (-)
LP/J	MGP_LPJ_G0039283	snoRNA gene	Chr8:32113180-32113323 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038644	snoRNA gene	Chr17:26905876-26906019 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040070	snoRNA gene	Chr8:31967526-31967669 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm23123
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving Gm23123
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000088273 (Evidence)
• NCBI Gene
  115488841

Representative Sequences			Length	Strain/Species
genomic	115488841	NCBI Gene Model | MGI Sequence Detail	144	C57BL/6J
transcript	XR_004939762	RefSeq | MGI Sequence Detail	144	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044