Gm23127 Gene Detail

Summary

• Symbol
  Gm23127
• Name
  predicted gene, 23127

• Feature Type
  snoRNA gene
• IDs
  MGI:5452904
  NCBI Gene: 115488213
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:75916187-75916316 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  72 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5452904	snoRNA gene	Chr13:75916174-75916316 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0038711	snoRNA gene	Chr13:76310137-76310266 (+)
A/J	MGP_AJ_G0038704	snoRNA gene	Chr13:73706291-73706420 (+)
AKR/J	MGP_AKRJ_G0038639	snoRNA gene	Chr13:75940095-75940224 (+)
BALB/cJ	MGP_BALBcJ_G0038689	snoRNA gene	Chr13:74186420-74186549 (+)
C3H/HeJ	MGP_C3HHeJ_G0038351	snoRNA gene	Chr13:75649796-75649925 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0039234	snoRNA gene	Chr13:78886511-78886640 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035984	snoRNA gene	Chr13:70534126-70534255 (+)
CAST/EiJ	MGP_CASTEiJ_G0037492	snoRNA gene	Chr13:74748808-74748937 (+)
CBA/J	MGP_CBAJ_G0038323	snoRNA gene	Chr13:81886009-81886138 (+)
DBA/2J	MGP_DBA2J_G0038512	snoRNA gene	Chr13:73424953-73425082 (+)
FVB/NJ	MGP_FVBNJ_G0038465	snoRNA gene	Chr13:72482548-72482677 (+)
LP/J	MGP_LPJ_G0038551	snoRNA gene	Chr13:76584852-76584981 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038463	snoRNA gene	Chr13:80273496-80273625 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039337	snoRNA gene	Chr13:75269825-75269954 (+)
PWK/PhJ	MGP_PWKPhJ_G0037178	snoRNA gene	Chr13:72317083-72317212 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0036935	snoRNA gene	Chr13:71651985-71652114 (+)
WSB/EiJ	MGP_WSBEiJ_G0037722	snoRNA gene	Chr13:75769790-75769919 (+)

Homology

• Gene Tree
  Gm23127
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000077449 (Evidence)
• NCBI Gene
  115488213

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000077449	Ensembl Gene Model | MGI Sequence Detail	130	C57BL/6J
transcript	ENSMUST00000104261	Ensembl | MGI Sequence Detail	130	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm23127:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120392	Chr13:75914285-75914289 (+)	-1,900 bp