Gm23205 Gene Detail

Summary

• Symbol
  Gm23205
• Name
  predicted gene, 23205

• Feature Type
  snRNA gene
• IDs
  MGI:5452982
  NCBI Gene: 115488985
• Alliance
  gene page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr18:38430992-38431094 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  84 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5452982	snRNA gene	Chr18:38430990-38431094 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037666	snRNA gene	Chr18:36740175-36740277 (+)
A/J	MGP_AJ_G0037658	snRNA gene	Chr18:35475107-35475209 (+)
AKR/J	MGP_AKRJ_G0037595	snRNA gene	Chr18:36433651-36433753 (+)
BALB/cJ	MGP_BALBcJ_G0037641	snRNA gene	Chr18:35542285-35542387 (+)
C3H/HeJ	MGP_C3HHeJ_G0037313	snRNA gene	Chr18:36506967-36507069 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0038167	snRNA gene	Chr18:38046020-38046122 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035091	snRNA gene	Chr18:35489080-35489182 (+)
CAST/EiJ	MGP_CASTEiJ_G0036479	snRNA gene	Chr18:36462472-36462574 (+)
CBA/J	MGP_CBAJ_G0037287	snRNA gene	Chr18:39168348-39168450 (+)
DBA/2J	MGP_DBA2J_G0037468	snRNA gene	Chr18:35068407-35068509 (+)
FVB/NJ	MGP_FVBNJ_G0037415	snRNA gene	Chr18:34790939-34791041 (+)
LP/J	MGP_LPJ_G0037521	snRNA gene	Chr18:36800912-36801014 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0037429	snRNA gene	Chr18:40418082-40418184 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0038276	snRNA gene	Chr18:36311533-36311635 (+)
PWK/PhJ	MGP_PWKPhJ_G0036175	snRNA gene	Chr18:35295937-35296039 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035961	snRNA gene	Chr18:36521422-36521524 (+)
WSB/EiJ	MGP_WSBEiJ_G0036695	snRNA gene	Chr18:36212890-36212992 (+)

Homology

• Gene Tree
  Gm23205
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000089296 (Evidence)
• NCBI Gene
  115488985

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089296	Ensembl Gene Model | MGI Sequence Detail	103	C57BL/6J
transcript	ENSMUST00000158671	Ensembl | MGI Sequence Detail	103	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm23205:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150784	Chr18:38429693-38429772 (+)	-1,259 bp
Tssr150785	Chr18:38429777-38429787 (+)	-1,210 bp
Tssr150786	Chr18:38429792-38429803 (+)	-1,194 bp
Tssr150787	Chr18:38429861-38429872 (+)	-1,125 bp
Tssr150788	Chr18:38429879-38429890 (+)	-1,107 bp
Tssr150789	Chr18:38430014-38430040 (+)	-965 bp
Tssr150790	Chr18:38430263-38430284 (+)	-718 bp
Tssr150791	Chr18:38430300-38430319 (+)	-682 bp
Tssr150792	Chr18:38430539-38430560 (+)	-442 bp