Gm23220 Gene Detail

Summary

• Symbol
  Gm23220
• Name
  predicted gene, 23220

• Feature Type
  snoRNA gene
• IDs
  MGI:5452997
  NCBI Gene: 115485988
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr15:80342239-80342375 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  131 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5452997	snoRNA gene	Chr15:80342239-80342375 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0038824	snoRNA gene	Chr15:80807099-80807235 (-)
A/J	MGP_AJ_G0038816	snoRNA gene	Chr15:77993078-77993214 (-)
AKR/J	MGP_AKRJ_G0038751	snoRNA gene	Chr15:80180501-80180637 (-)
BALB/cJ	MGP_BALBcJ_G0038802	snoRNA gene	Chr15:78000795-78000931 (-)
C3H/HeJ	MGP_C3HHeJ_G0038464	snoRNA gene	Chr15:80165810-80165946 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0039348	snoRNA gene	Chr15:83989049-83989185 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036086	snoRNA gene	Chr15:74480326-74480462 (-)
CAST/EiJ	MGP_CASTEiJ_G0037605	snoRNA gene	Chr15:80892342-80892478 (-)
CBA/J	MGP_CBAJ_G0038436	snoRNA gene	Chr15:86633219-86633355 (-)
DBA/2J	MGP_DBA2J_G0038625	snoRNA gene	Chr15:77486509-77486645 (-)
FVB/NJ	MGP_FVBNJ_G0038579	snoRNA gene	Chr15:76521153-76521289 (-)
LP/J	MGP_LPJ_G0038665	snoRNA gene	Chr15:80985605-80985741 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038577	snoRNA gene	Chr15:91638847-91638983 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039452	snoRNA gene	Chr15:80211929-80212065 (-)
PWK/PhJ	MGP_PWKPhJ_G0037290	snoRNA gene	Chr15:77501052-77501188 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0037045	snoRNA gene	Chr15:80008722-80008858 (-)
WSB/EiJ	MGP_WSBEiJ_G0037834	snoRNA gene	Chr15:80624389-80624525 (-)

Homology

• Gene Tree
  Gm23220
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  15 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm23220
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000088740 (Evidence)
• NCBI Gene
  115485988

Representative Sequences			Length	Strain/Species
genomic	115485988	NCBI Gene Model | MGI Sequence Detail	137	C57BL/6J
transcript	XR_004939093	RefSeq | MGI Sequence Detail	137	C57BL/6J

References

• Summaries
  All 18

  Phenotypes 15
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27