Gm23238 Gene Detail

Summary

• Symbol
  Gm23238
• Name
  predicted gene, 23238

• Feature Type
  snRNA gene
• IDs
  MGI:5453015
  NCBI Gene: 115489085
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:18710105-18710268 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  150 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5453015	snRNA gene	Chr19:18710105-18710268 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037701	snRNA gene	Chr19:16626756-16627594 (+)
A/J	MGP_AJ_G0037691	snRNA gene	Chr19:15681921-15682084 (+)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0035118	snRNA gene	Chr19:16049389-16049553 (+)
CAST/EiJ	MGP_CASTEiJ_G0036512	snRNA gene	Chr19:15891974-15892137 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0037503	snRNA gene	Chr19:15711724-15711887 (+)
FVB/NJ	MGP_FVBNJ_G0037449	snRNA gene	Chr19:15625953-15627619 (+)
LP/J	MGP_LPJ_G0037555	snRNA gene	Chr19:16586547-16586710 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0037463	snRNA gene	Chr19:17723182-17723323 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0038310	snRNA gene	Chr19:16246408-16246571 (+)
PWK/PhJ	MGP_PWKPhJ_G0036208	snRNA gene	Chr19:15258143-15258306 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035993	snRNA gene	Chr19:15536627-15536794 (+)
WSB/EiJ	MGP_WSBEiJ_G0036729	snRNA gene	Chr19:16294466-16294629 (+)

Homology

• Gene Tree
  Gm23238
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000064941 (Evidence)
• NCBI Gene
  115489085

Representative Sequences			Length	Strain/Species
genomic	115489085	NCBI Gene Model | MGI Sequence Detail	164	C57BL/6J
transcript	XR_004940305	RefSeq | MGI Sequence Detail	164	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm23238:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155457	Chr19:18708793-18708804 (+)	-1,306 bp
Tssr155458	Chr19:18710104-18710107 (+)	1 bp