Gm23467 Gene Detail

Summary

• Symbol
  Gm23467
• Name
  predicted gene, 23467

• Feature Type
  snRNA gene
• IDs
  MGI:5453244
  NCBI Gene: 115489864
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:138048899-138049057 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5453244	snRNA gene	Chr3:138048899-138049057 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037863	snRNA gene	Chr3:141396304-141396462 (+)
A/J	MGP_AJ_G0037848	snRNA gene	Chr3:136385604-136385762 (+)
AKR/J	MGP_AKRJ_G0037788	snRNA gene	Chr3:140016111-140016269 (+)
BALB/cJ	MGP_BALBcJ_G0037833	snRNA gene	Chr3:136191569-136191727 (+)
C3H/HeJ	MGP_C3HHeJ_G0037507	snRNA gene	Chr3:140338267-140338425 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0038363	snRNA gene	Chr3:146268892-146269050 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035254	snRNA gene	Chr3:131801412-131801570 (+)
CAST/EiJ	MGP_CASTEiJ_G0036670	snRNA gene	Chr3:140113241-140113487 (+)
CBA/J	MGP_CBAJ_G0037480	snRNA gene	Chr3:151229806-151229964 (+)
DBA/2J	MGP_DBA2J_G0037664	snRNA gene	Chr3:135505914-135506072 (+)
FVB/NJ	MGP_FVBNJ_G0037611	snRNA gene	Chr3:132965675-132965833 (+)
LP/J	MGP_LPJ_G0037713	snRNA gene	Chr3:142781117-142781275 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0037623	snRNA gene	Chr3:159325185-159325343 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0038474	snRNA gene	Chr3:139558494-139558652 (+)
PWK/PhJ	MGP_PWKPhJ_G0036363	snRNA gene	Chr3:135269773-135269931 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0036141	snRNA gene	Chr3:137659094-137659252 (+)
WSB/EiJ	MGP_WSBEiJ_G0036884	snRNA gene	Chr3:140398512-140398670 (+)

Homology

• Gene Tree
  Gm23467
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000087752 (Evidence)
• NCBI Gene
  115489864

Representative Sequences			Length	Strain/Species
genomic	115489864	NCBI Gene Model | MGI Sequence Detail	159	C57BL/6J
transcript	XR_004941768	RefSeq | MGI Sequence Detail	159	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm23467:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31979	Chr3:138048553-138048572 (+)	-336 bp