Gm23779 Gene Detail

Summary

• Symbol
  Gm23779
• Name
  predicted gene, 23779

• Feature Type
  snRNA gene
• IDs
  MGI:5453556
  NCBI Gene: 115488273
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:21670508-21670571 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5453556	snRNA gene	Chr13:21670508-21670571 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0037418	snRNA gene	Chr13:18752621-18752684 (-)
A/J	MGP_AJ_G0037412	snRNA gene	Chr13:18341937-18342000 (-)
AKR/J	MGP_AKRJ_G0037352	snRNA gene	Chr13:18648118-18648181 (-)
BALB/cJ	MGP_BALBcJ_G0037398	snRNA gene	Chr13:18397722-18397785 (-)
C3H/HeJ	MGP_C3HHeJ_G0037076	snRNA gene	Chr13:18738481-18738544 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037915	snRNA gene	Chr13:19419821-19419884 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0036251	snRNA gene	Chr13:18546800-18546863 (-)
CBA/J	MGP_CBAJ_G0037050	snRNA gene	Chr13:20091659-20091722 (-)
DBA/2J	MGP_DBA2J_G0037228	snRNA gene	Chr13:17980730-17980793 (-)
FVB/NJ	MGP_FVBNJ_G0037175	snRNA gene	Chr13:17645270-17645333 (-)
LP/J	MGP_LPJ_G0037278	snRNA gene	Chr13:19002639-19002702 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0037191	snRNA gene	Chr13:20474536-20474599 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0038031	snRNA gene	Chr13:18462575-18462638 (-)
PWK/PhJ	MGP_PWKPhJ_G0035946	snRNA gene	Chr13:18026966-18027029 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035738	snRNA gene	Chr13:17475637-17475700 (-)
WSB/EiJ	MGP_WSBEiJ_G0036461	snRNA gene	Chr13:18546164-18546227 (-)

Homology

• Gene Tree
  Gm23779
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm23779
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000088563 (Evidence)
• NCBI Gene
  115488273

Representative Sequences			Length	Strain/Species
genomic	115488273	NCBI Gene Model | MGI Sequence Detail	64	C57BL/6J
transcript	XR_004938341	RefSeq | MGI Sequence Detail	64	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:71411 Arkell RM, et al., Genetic, physical, and phenotypic characterization of the Del(13)Svea36H mouse. Mamm Genome. 2001 Sep;12(9):687-94
• Latest
  J:141688 Goldsworthy M, et al., Role of the transcription factor sox4 in insulin secretion and impaired glucose tolerance. Diabetes. 2008 Aug;57(8):2234-44