Gm23925 Gene Detail

Summary

• Symbol
  Gm23925
• Name
  predicted gene, 23925

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:5453702
  NCBI Gene: 115489589
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:158201718-158201849 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  35

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5453702	lncRNA gene	Chr2:158201717-158201849 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0006054	lincRNA gene	Chr2:163432606-163432737 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0039058	snoRNA gene	Chr2:163432607-163432738 (-)
A/J	MGP_AJ_G0006045	lincRNA gene	Chr2:156874844-156874975 (-)
A/J	MGP_AJ_G0039054	snoRNA gene	Chr2:156874845-156874976 (-)
AKR/J	MGP_AKRJ_G0038985	snoRNA gene	Chr2:161498949-161499080 (-)
AKR/J	MGP_AKRJ_G0006021	lincRNA gene	Chr2:161498948-161499079 (-)
BALB/cJ	MGP_BALBcJ_G0039037	snoRNA gene	Chr2:157179786-157179917 (-)
BALB/cJ	MGP_BALBcJ_G0006022	lincRNA gene	Chr2:157179785-157179916 (-)
C3H/HeJ	MGP_C3HHeJ_G0005971	lincRNA gene	Chr2:161828248-161828379 (-)
C3H/HeJ	MGP_C3HHeJ_G0038699	snoRNA gene	Chr2:161828249-161828380 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0006184	lincRNA gene	Chr2:168301716-168301847 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0039585	snoRNA gene	Chr2:168301717-168301848 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036297	snoRNA gene	Chr2:150315460-150315591 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005509	lincRNA gene	Chr2:150315459-150315590 (-)
CAST/EiJ	MGP_CASTEiJ_G0005908	lincRNA gene	Chr2:162192735-162192866 (-)
CAST/EiJ	MGP_CASTEiJ_G0037836	snoRNA gene	Chr2:162192736-162192867 (-)
CBA/J	MGP_CBAJ_G0005957	lincRNA gene	Chr2:174333052-174333183 (-)
CBA/J	MGP_CBAJ_G0038670	snoRNA gene	Chr2:174333053-174333184 (-)
DBA/2J	MGP_DBA2J_G0005976	lincRNA gene	Chr2:156049802-156049933 (-)
DBA/2J	MGP_DBA2J_G0038856	snoRNA gene	Chr2:156049803-156049934 (-)
FVB/NJ	MGP_FVBNJ_G0038810	snoRNA gene	Chr2:154458358-154458489 (-)
FVB/NJ	MGP_FVBNJ_G0006001	lincRNA gene	Chr2:154458357-154458488 (-)
LP/J	MGP_LPJ_G0006059	lincRNA gene	Chr2:163522497-163522628 (-)
LP/J	MGP_LPJ_G0038899	snoRNA gene	Chr2:163522498-163522629 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038811	snoRNA gene	Chr2:178130013-178130144 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005990	lincRNA gene	Chr2:178130012-178130143 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006185	lincRNA gene	Chr2:161328860-161328991 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039685	snoRNA gene	Chr2:161328861-161328992 (-)
PWK/PhJ	MGP_PWKPhJ_G0005854	lincRNA gene	Chr2:155583805-155583936 (-)
PWK/PhJ	MGP_PWKPhJ_G0037523	snoRNA gene	Chr2:155583806-155583937 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0037272	snoRNA gene	Chr2:160244431-160244562 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0005764	lincRNA gene	Chr2:160244430-160244561 (-)
WSB/EiJ	MGP_WSBEiJ_G0005957	lincRNA gene	Chr2:162220614-162220745 (-)
WSB/EiJ	MGP_WSBEiJ_G0038063	snoRNA gene	Chr2:162220615-162220746 (-)

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  1

• Ensembl
  ENSMUSG00000064405 (Evidence), ENSMUSG00000100992 (Evidence)
• NCBI Gene
  115489589

Representative Sequences			Length	Strain/Species
genomic	115489589	NCBI Gene Model | MGI Sequence Detail	132	C57BL/6J
transcript	XR_004941160	RefSeq | MGI Sequence Detail	132	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm23925:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr27224	Chr2:158202487-158202530 (-)	-660 bp