Mir5625 Gene Detail

Summary

• Symbol
  Mir5625
• Name
  microRNA 5625
• Synonyms
  mmu-mir-5625

• Feature Type
  miRNA gene
• IDs
  MGI:5453707
  NCBI Gene: 100885838
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:30805280-30805359 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  95 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5453707	miRNA gene	Chr5:30805280-30805359 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0008805	miRNA gene	Chr5:28604418-28604497 (+)
A/J	MGP_AJ_G0008789	miRNA gene	Chr5:27664828-27664907 (+)
AKR/J	MGP_AKRJ_G0008781	miRNA gene	Chr5:28816298-28816377 (+)
BALB/cJ	MGP_BALBcJ_G0008777	miRNA gene	Chr5:28191795-28191874 (+)
C3H/HeJ	MGP_C3HHeJ_G0008718	miRNA gene	Chr5:28810335-28810414 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0009004	miRNA gene	Chr5:30344744-30344823 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007939	miRNA gene	Chr5:25154423-25154502 (+)
CAST/EiJ	MGP_CASTEiJ_G0008559	miRNA gene	Chr5:27908761-27908840 (+)
CBA/J	MGP_CBAJ_G0008684	miRNA gene	Chr5:30939130-30939209 (+)
DBA/2J	MGP_DBA2J_G0008715	miRNA gene	Chr5:27853972-27854051 (+)
FVB/NJ	MGP_FVBNJ_G0008735	miRNA gene	Chr5:27264699-27264778 (+)
LP/J	MGP_LPJ_G0008809	miRNA gene	Chr5:29058343-29058422 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0008699	miRNA gene	Chr5:31831025-31831104 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0008984	miRNA gene	Chr5:28315806-28315885 (+)
PWK/PhJ	MGP_PWKPhJ_G0008489	miRNA gene	Chr5:26967623-26967702 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0008339	miRNA gene	Chr5:27661156-27661235 (+)
WSB/EiJ	MGP_WSBEiJ_G0008657	miRNA gene	Chr5:28387779-28387858 (+)

Homology

• Gene Tree
  Mir5625
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  21 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Radiation induced
  2
• Spontaneous
  1
• Genomic Mutations
  5 involving Mir5625
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000093710 (Evidence)
• NCBI Gene
  100885838

Representative Sequences			Length	Strain/Species
genomic	100885838	NCBI Gene Model | MGI Sequence Detail	80	C57BL/6J
transcript	NR_049199	RefSeq | MGI Sequence Detail	80	ZRU/MplStud

Other Database
Links

miRBase

MI0019194

References

• Summaries
  All 25

  Diseases 1

  Phenotypes 21
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

TSS for Mir5625:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr45604	Chr5:30805279-30805342 (+)	31 bp