Gm23980 Gene Detail

Summary

• Symbol
  Gm23980
• Name
  predicted gene, 23980

• Feature Type
  snRNA gene
• IDs
  MGI:5453757
  NCBI Gene: 115488561
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr15:23646506-23646663 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  113 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5453757	snRNA gene	Chr15:23646503-23646663 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0037507	snRNA gene	Chr15:21565871-21566028 (-)
A/J	MGP_AJ_G0037502	snRNA gene	Chr15:20720761-20720918 (-)
AKR/J	MGP_AKRJ_G0037442	snRNA gene	Chr15:21197723-21197880 (-)
BALB/cJ	MGP_BALBcJ_G0037488	snRNA gene	Chr15:20726378-20726535 (-)
C3H/HeJ	MGP_C3HHeJ_G0037167	snRNA gene	Chr15:21224361-21224518 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0038006	snRNA gene	Chr15:22486579-22486736 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034972	snRNA gene	Chr15:19248983-19249126 (-)
CAST/EiJ	MGP_CASTEiJ_G0036338	snRNA gene	Chr15:21569266-21569423 (-)
CBA/J	MGP_CBAJ_G0037139	snRNA gene	Chr15:23212196-23212353 (-)
DBA/2J	MGP_DBA2J_G0037317	snRNA gene	Chr15:20519753-20519910 (-)
FVB/NJ	MGP_FVBNJ_G0037262	snRNA gene	Chr15:20124031-20124188 (-)
LP/J	MGP_LPJ_G0037366	snRNA gene	Chr15:21405568-21405725 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0037277	snRNA gene	Chr15:25744885-25745042 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0038121	snRNA gene	Chr15:21411368-21411525 (-)
PWK/PhJ	MGP_PWKPhJ_G0036030	snRNA gene	Chr15:20705126-20705283 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035822	snRNA gene	Chr15:21162013-21162170 (-)
WSB/EiJ	MGP_WSBEiJ_G0036550	snRNA gene	Chr15:21420337-21420494 (-)

Homology

• Gene Tree
  Gm23980
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000087760 (Evidence)
• NCBI Gene
  115488561

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087760	Ensembl Gene Model | MGI Sequence Detail	158	C57BL/6J
transcript	ENSMUST00000157135	Ensembl | MGI Sequence Detail	158	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;