Gm24045 Gene Detail

Summary

• Symbol
  Gm24045
• Name
  predicted gene, 24045

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:5453822
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr4:114845161-114845258 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5453822	unclassified non-coding RNA gene	Chr4:114845161-114845258 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0009715	unclassified non-coding RNA gene	Chr4:115754307-115754404 (+)
A/J	MGP_AJ_G0009702	unclassified non-coding RNA gene	Chr4:111341484-111341581 (+)
AKR/J	MGP_AKRJ_G0009685	unclassified non-coding RNA gene	Chr4:113638038-113638135 (+)
BALB/cJ	MGP_BALBcJ_G0009684	unclassified non-coding RNA gene	Chr4:111972964-111973061 (+)
C3H/HeJ	MGP_C3HHeJ_G0009617	unclassified non-coding RNA gene	Chr4:115259222-115259319 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0009926	unclassified non-coding RNA gene	Chr4:120227053-120227150 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0008748	unclassified non-coding RNA gene	Chr4:105433089-105433193 (+)
CAST/EiJ	MGP_CASTEiJ_G0009436	unclassified non-coding RNA gene	Chr4:112676277-112676374 (+)
CBA/J	MGP_CBAJ_G0009590	unclassified non-coding RNA gene	Chr4:123346263-123346360 (+)
DBA/2J	MGP_DBA2J_G0009618	unclassified non-coding RNA gene	Chr4:111978370-111978467 (+)
FVB/NJ	MGP_FVBNJ_G0009634	unclassified non-coding RNA gene	Chr4:110451346-110451443 (+)
LP/J	MGP_LPJ_G0009711	unclassified non-coding RNA gene	Chr4:115955995-115956092 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009603	unclassified non-coding RNA gene	Chr4:128491468-128491565 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0009899	unclassified non-coding RNA gene	Chr4:114887658-114887755 (+)
PWK/PhJ	MGP_PWKPhJ_G0009359	unclassified non-coding RNA gene	Chr4:108770750-108770847 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009195	unclassified non-coding RNA gene	Chr4:111280618-111280715 (+)
WSB/EiJ	MGP_WSBEiJ_G0009536	unclassified non-coding RNA gene	Chr4:114669517-114669614 (+)

Homology

• Gene Tree
  Gm24045
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm24045
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000065047 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000065047	Ensembl Gene Model | MGI Sequence Detail	98	C57BL/6J
transcript	ENSMUST00000083113	Ensembl | MGI Sequence Detail	98	Not Applicable

References

• Summaries
  All 7

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for Gm24045:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38423	Chr4:114843861-114843881 (+)	-1,290 bp
Tssr38424	Chr4:114844456-114844503 (+)	-681 bp
Tssr38425	Chr4:114844521-114844534 (+)	-633 bp