Gm24596 Gene Detail

Summary

• Symbol
  Gm24596
• Name
  predicted gene, 24596

• Feature Type
  snRNA gene
• IDs
  MGI:5454373
  NCBI Gene: 115486854
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr7:126163046-126163152 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  103 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5454373	snRNA gene	Chr7:126163046-126163152 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0038157	snRNA gene	Chr7:130843362-130843468 (-)
A/J	MGP_AJ_G0038150	snRNA gene	Chr7:127385466-127385572 (-)
AKR/J	MGP_AKRJ_G0038089	snRNA gene	Chr7:130606218-130606324 (-)
BALB/cJ	MGP_BALBcJ_G0038135	snRNA gene	Chr7:127042483-127042589 (-)
C3H/HeJ	MGP_C3HHeJ_G0037805	snRNA gene	Chr7:130534905-130535011 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0038667	snRNA gene	Chr7:135934171-135934277 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0036955	snRNA gene	Chr7:122325485-122325592 (-)
CBA/J	MGP_CBAJ_G0037778	snRNA gene	Chr7:140507853-140507959 (-)
DBA/2J	MGP_DBA2J_G0037963	snRNA gene	Chr7:125360708-125360814 (-)
FVB/NJ	MGP_FVBNJ_G0037911	snRNA gene	Chr7:125210334-125210440 (-)
LP/J	MGP_LPJ_G0038003	snRNA gene	Chr7:132310874-132310980 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0037916	snRNA gene	Chr7:141695938-141696044 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0038778	snRNA gene	Chr7:129623760-129623866 (-)
PWK/PhJ	MGP_PWKPhJ_G0036644	snRNA gene	Chr7:118347214-118347485 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0036411	snRNA gene	Chr7:116449786-116449895 (-)
WSB/EiJ	MGP_WSBEiJ_G0037177	snRNA gene	Chr7:130589001-130589107 (-)

Homology

• Gene Tree
  Gm24596
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000084453 (Evidence)
• NCBI Gene
  115486854

Representative Sequences			Length	Strain/Species
genomic	115486854	NCBI Gene Model | MGI Sequence Detail	107	C57BL/6J
transcript	XR_004934719	RefSeq | MGI Sequence Detail	107	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm24596:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr74749	Chr7:126163933-126163951 (-)	-790 bp
Tssr74748	Chr7:126163905-126163925 (-)	-763 bp
Tssr74747	Chr7:126163759-126163784 (-)	-620 bp
Tssr74746	Chr7:126163670-126163712 (-)	-539 bp
Tssr74745	Chr7:126163630-126163656 (-)	-491 bp