Gm24624 Gene Detail

Summary

• Symbol
  Gm24624
• Name
  predicted gene, 24624

• Feature Type
  snRNA gene
• IDs
  MGI:5454401
  NCBI Gene: 115489241
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:115255429-115255592 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5454401	snRNA gene	ChrX:115255429-115255592 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0038343	snRNA gene	ChrX:113140164-113140327 (+)
A/J	MGP_AJ_G0038338	snRNA gene	ChrX:112897251-112897414 (+)
AKR/J	MGP_AKRJ_G0038275	snRNA gene	ChrX:116465079-116465242 (+)
BALB/cJ	MGP_BALBcJ_G0038322	snRNA gene	ChrX:111401282-111401445 (+)
C3H/HeJ	MGP_C3HHeJ_G0037988	snRNA gene	ChrX:113520956-113521119 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0038859	snRNA gene	ChrX:116455455-116455618 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035648	snRNA gene	ChrX:109263116-109263279 (+)
CAST/EiJ	MGP_CASTEiJ_G0037132	snRNA gene	ChrX:97298769-97298932 (+)
CBA/J	MGP_CBAJ_G0037957	snRNA gene	ChrX:120155161-120155324 (+)
DBA/2J	MGP_DBA2J_G0038149	snRNA gene	ChrX:112140571-112140734 (+)
FVB/NJ	MGP_FVBNJ_G0038096	snRNA gene	ChrX:111531406-111531569 (+)
LP/J	MGP_LPJ_G0038188	snRNA gene	ChrX:114051279-114051442 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038096	snRNA gene	ChrX:125915596-125915759 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0038964	snRNA gene	ChrX:112654207-112654370 (+)
PWK/PhJ	MGP_PWKPhJ_G0036823	snRNA gene	ChrX:94665948-94666111 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0036583	snRNA gene	ChrX:98067332-98067495 (+)
WSB/EiJ	MGP_WSBEiJ_G0037360	snRNA gene	ChrX:111382243-111382406 (+)

Homology

• Gene Tree
  Gm24624
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000064551 (Evidence)
• NCBI Gene
  115489241

Representative Sequences			Length	Strain/Species
genomic	115489241	NCBI Gene Model | MGI Sequence Detail	164	C57BL/6J
transcript	XR_004940562	RefSeq | MGI Sequence Detail	164	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm24624:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161916	ChrX:115255430-115255435 (+)	4 bp