Mir5624 Gene Detail

Summary

• Symbol
  Mir5624
• Name
  microRNA 5624
• Synonyms
  mmu-mir-5624

• Feature Type
  miRNA gene
• IDs
  MGI:5454852
  NCBI Gene: 100885837
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:93927285-93927345 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5454852	miRNA gene	Chr13:93927285-93927345 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0008090	miRNA gene	Chr13:95165111-95165171 (+)
A/J	MGP_AJ_G0008079	miRNA gene	Chr13:91617177-91617237 (+)
AKR/J	MGP_AKRJ_G0008058	miRNA gene	Chr13:94416823-94416883 (+)
BALB/cJ	MGP_BALBcJ_G0008060	miRNA gene	Chr13:92264541-92264601 (+)
C3H/HeJ	MGP_C3HHeJ_G0008005	miRNA gene	Chr13:94118695-94118755 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0008247	miRNA gene	Chr13:98065642-98065702 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007346	miRNA gene	Chr13:87474309-87474371 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0007972	miRNA gene	Chr13:101966895-101966955 (+)
DBA/2J	MGP_DBA2J_G0008007	miRNA gene	Chr13:91408367-91408427 (+)
FVB/NJ	MGP_FVBNJ_G0008031	miRNA gene	Chr13:90199309-90199369 (+)
LP/J	MGP_LPJ_G0008090	miRNA gene	Chr13:95287481-95287541 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007999	miRNA gene	Chr13:102454311-102454371 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0008246	miRNA gene	Chr13:93789242-93789302 (+)
PWK/PhJ	MGP_PWKPhJ_G0007806	miRNA gene	Chr13:90123380-90123440 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0007702	miRNA gene	Chr13:90075818-90075878 (+)
WSB/EiJ	MGP_WSBEiJ_G0007959	miRNA gene	Chr13:94301255-94301315 (+)

Homology

• Gene Tree
  Mir5624
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Mir5624
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000093480 (Evidence)
• NCBI Gene
  100885837

Representative Sequences			Length	Strain/Species
genomic	100885837	NCBI Gene Model | MGI Sequence Detail	61	C57BL/6J
transcript	NR_049198	RefSeq | MGI Sequence Detail	61	ZRU/MplStud

Other Database
Links

miRBase

MI0019193

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4