Gm25080 Gene Detail

Summary

• Symbol
  Gm25080
• Name
  predicted gene, 25080

• Feature Type
  snRNA gene
• IDs
  MGI:5454857
  NCBI Gene: 115489755
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:137421419-137421525 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  56 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5454857	snRNA gene	Chr3:137421419-137421525 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037861	snRNA gene	Chr3:140733490-140733594 (+)
A/J	MGP_AJ_G0037846	snRNA gene	Chr3:135764097-135764201 (+)
AKR/J	MGP_AKRJ_G0037786	snRNA gene	Chr3:139368492-139368596 (+)
BALB/cJ	MGP_BALBcJ_G0037831	snRNA gene	Chr3:135569387-135569491 (+)
C3H/HeJ	MGP_C3HHeJ_G0037505	snRNA gene	Chr3:139687043-139687147 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0038361	snRNA gene	Chr3:145593329-145593566 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0036668	snRNA gene	Chr3:139448722-139448826 (+)
CBA/J	MGP_CBAJ_G0037478	snRNA gene	Chr3:150546155-150546259 (+)
DBA/2J	MGP_DBA2J_G0037662	snRNA gene	Chr3:134885780-134885884 (+)
FVB/NJ	MGP_FVBNJ_G0037609	snRNA gene	Chr3:132349277-132349381 (+)
LP/J	MGP_LPJ_G0037711	snRNA gene	Chr3:142144218-142144322 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0037621	snRNA gene	Chr3:158659252-158659356 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0038472	snRNA gene	Chr3:138906248-138906352 (+)
PWK/PhJ	MGP_PWKPhJ_G0036361	snRNA gene	Chr3:134629714-134629818 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0036882	snRNA gene	Chr3:139723541-139723645 (+)

Homology

• Gene Tree
  Gm25080
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000064460 (Evidence)
• NCBI Gene
  115489755

Representative Sequences			Length	Strain/Species
genomic	115489755	NCBI Gene Model | MGI Sequence Detail	107	C57BL/6J
transcript	XR_004941639	RefSeq | MGI Sequence Detail	107	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;