Snord59a Gene Detail

Summary

• Symbol
  Snord59a
• Name
  small nucleolar RNA, C/D box 59A
• Synonyms
  Gm25206

• Feature Type
  snoRNA gene
• IDs
  MGI:5454983
  NCBI Gene: 115487514
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:127920012-127920085 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  61 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5454983	snoRNA gene	Chr10:127920011-127920085 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0038532	snoRNA gene	Chr10:131759694-131759767 (+)
A/J	MGP_AJ_G0038522	snoRNA gene	Chr10:126487642-126487715 (+)
AKR/J	MGP_AKRJ_G0038460	snoRNA gene	Chr10:130218802-130218875 (+)
BALB/cJ	MGP_BALBcJ_G0038509	snoRNA gene	Chr10:126871483-126871556 (+)
C3H/HeJ	MGP_C3HHeJ_G0038172	snoRNA gene	Chr10:130372236-130372309 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0039047	snoRNA gene	Chr10:136245135-136245208 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035825	snoRNA gene	Chr10:120451951-120452023 (+)
CAST/EiJ	MGP_CASTEiJ_G0037316	snoRNA gene	Chr10:131074480-131074553 (+)
CBA/J	MGP_CBAJ_G0038144	snoRNA gene	Chr10:141754841-141754914 (+)
DBA/2J	MGP_DBA2J_G0038334	snoRNA gene	Chr10:125561768-125561841 (+)
FVB/NJ	MGP_FVBNJ_G0038285	snoRNA gene	Chr10:124496122-124496195 (+)
LP/J	MGP_LPJ_G0038374	snoRNA gene	Chr10:132375719-132375792 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038284	snoRNA gene	Chr10:144362076-144362149 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039156	snoRNA gene	Chr10:130302400-130302473 (+)
PWK/PhJ	MGP_PWKPhJ_G0037002	snoRNA gene	Chr10:125812120-125812193 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0036758	snoRNA gene	Chr10:129386183-129386256 (+)
WSB/EiJ	MGP_WSBEiJ_G0037547	snoRNA gene	Chr10:130518676-130518749 (+)

Homology

• Gene Tree
  Snord59a
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000064778 (Evidence)
• NCBI Gene
  115487514

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000064778	Ensembl Gene Model | MGI Sequence Detail	74	C57BL/6J
transcript	ENSMUST00000082844	Ensembl | MGI Sequence Detail	74	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Snord59a:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr96320	Chr10:127919760-127919807 (+)	-228 bp
Tssr96321	Chr10:127919810-127919854 (+)	-180 bp