Gm25211 Gene Detail

Summary

• Symbol
  Gm25211
• Name
  predicted gene, 25211

• Feature Type
  snRNA gene
• IDs
  MGI:5454988
  NCBI Gene: 115490323
• Alliance
  gene page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr5:87064075-87064181 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  45 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5454988	snRNA gene	Chr5:87064075-87064181 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm25211
  

Sequences &
Gene Models

• All Sequences
  5
• RefSeq
  1

• Ensembl
  ENSMUSG00000119825 (Evidence)
• NCBI Gene
  115490323

Representative Sequences			Length	Strain/Species
genomic	115490323	NCBI Gene Model | MGI Sequence Detail	107	C57BL/6J
transcript	XR_004942875	RefSeq | MGI Sequence Detail	107	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm25211:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr51563	Chr5:87065326-87065342 (-)	-1,153 bp
Tssr51562	Chr5:87065174-87065187 (-)	-1,000 bp
Tssr51561	Chr5:87065140-87065152 (-)	-965 bp
Tssr51560	Chr5:87064899-87064903 (-)	-720 bp
Tssr51559	Chr5:87064889-87064894 (-)	-711 bp
Tssr1521	Chr5:87064858-87064863 (-)	-680 bp
Tssr51558	Chr5:87064836-87064846 (-)	-660 bp