Gm25296 Gene Detail

Summary

• Symbol
  Gm25296
• Name
  predicted gene, 25296

• Feature Type
  snoRNA gene
• IDs
  MGI:5455073
  NCBI Gene: 115485831
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:48691693-48691759 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  22 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5455073	snoRNA gene	Chr11:48691692-48691759 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0038563	snoRNA gene	Chr11:47828901-47828967 (+)
A/J	MGP_AJ_G0038553	snoRNA gene	Chr11:45924827-45924893 (+)
AKR/J	MGP_AKRJ_G0038491	snoRNA gene	Chr11:47347861-47347927 (+)
BALB/cJ	MGP_BALBcJ_G0038540	snoRNA gene	Chr11:46138618-46138684 (+)
C3H/HeJ	MGP_C3HHeJ_G0038203	snoRNA gene	Chr11:47354902-47354968 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0039078	snoRNA gene	Chr11:49263325-49263391 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035856	snoRNA gene	Chr11:43790384-43790450 (+)
CAST/EiJ	MGP_CASTEiJ_G0037347	snoRNA gene	Chr11:47518948-47519014 (+)
CBA/J	MGP_CBAJ_G0038175	snoRNA gene	Chr11:51522434-51522500 (+)
DBA/2J	MGP_DBA2J_G0038365	snoRNA gene	Chr11:45779186-45779252 (+)
FVB/NJ	MGP_FVBNJ_G0038316	snoRNA gene	Chr11:45372938-45373004 (+)
LP/J	MGP_LPJ_G0038405	snoRNA gene	Chr11:48072006-48072072 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038315	snoRNA gene	Chr11:52983079-52983145 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039187	snoRNA gene	Chr11:47512433-47512499 (+)
PWK/PhJ	MGP_PWKPhJ_G0037033	snoRNA gene	Chr11:46172982-46173048 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0036789	snoRNA gene	Chr11:47246280-47246346 (+)
WSB/EiJ	MGP_WSBEiJ_G0037578	snoRNA gene	Chr11:47145642-47145708 (+)

Homology

• Gene Tree
  Gm25296
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000064500 (Evidence)
• NCBI Gene
  115485831

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000064500	Ensembl Gene Model | MGI Sequence Detail	67	C57BL/6J
transcript	ENSMUST00000082566	Ensembl | MGI Sequence Detail	67	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm25296:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101141	Chr11:48691691-48691695 (+)	0 bp