Gm25336 Gene Detail

Summary

• Symbol
  Gm25336
• Name
  predicted gene, 25336

• Feature Type
  snoRNA gene
  BioType Conflict
  
• IDs
  MGI:5455113
  NCBI Gene: 115485816
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:153955841-153955945 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  131 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5455113	snoRNA gene	Chr1:153955841-153955964 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0038448	snoRNA gene	Chr1:158961797-158961901 (-)
A/J	MGP_AJ_G0038438	snoRNA gene	Chr1:152541182-152541286 (-)
AKR/J	MGP_AKRJ_G0038376	snoRNA gene	Chr1:157271725-157271829 (-)
BALB/cJ	MGP_BALBcJ_G0038425	snoRNA gene	Chr1:153089913-153090017 (-)
C3H/HeJ	MGP_C3HHeJ_G0038088	snoRNA gene	Chr1:157383750-157383854 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0038963	snoRNA gene	Chr1:164445808-164445912 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035744	snoRNA gene	Chr1:144819988-144820092 (-)
CAST/EiJ	MGP_CASTEiJ_G0037233	snoRNA gene	Chr1:156892115-156892217 (-)
CBA/J	MGP_CBAJ_G0038060	snoRNA gene	Chr1:170248279-170248383 (-)
DBA/2J	MGP_DBA2J_G0038251	snoRNA gene	Chr1:151560918-151561022 (-)
FVB/NJ	MGP_FVBNJ_G0038201	snoRNA gene	Chr1:150018970-150019074 (-)
LP/J	MGP_LPJ_G0038290	snoRNA gene	Chr1:160100286-160100390 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038200	snoRNA gene	Chr1:177862937-177863041 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039072	snoRNA gene	Chr1:157051852-157051956 (-)
PWK/PhJ	MGP_PWKPhJ_G0036918	snoRNA gene	Chr1:150622295-150622399 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0036675	snoRNA gene	Chr1:155836406-155836510 (-)
WSB/EiJ	MGP_WSBEiJ_G0037464	snoRNA gene	Chr1:157134606-157134710 (-)

Homology

• Gene Tree
  Gm25336
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000088669 (Evidence)
• NCBI Gene
  115485816

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000088669	Ensembl Gene Model | MGI Sequence Detail	105	C57BL/6J
transcript	ENSMUST00000158044	Ensembl | MGI Sequence Detail	105	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm25336:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr14296	Chr1:153956455-153956498 (-)	-532 bp