Gm25402 Gene Detail

Summary

• Symbol
  Gm25402
• Name
  predicted gene, 25402

• Feature Type
  snoRNA gene
• IDs
  MGI:5455179
  NCBI Gene: 115490460
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:39399223-39399353 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  106 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5455179	snoRNA gene	Chr6:39399223-39399353 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0039305	snoRNA gene	Chr6:37804885-37805015 (-)
A/J	MGP_AJ_G0039300	snoRNA gene	Chr6:36150734-36150864 (-)
AKR/J	MGP_AKRJ_G0039229	snoRNA gene	Chr6:37306381-37306511 (-)
BALB/cJ	MGP_BALBcJ_G0039283	snoRNA gene	Chr6:36372157-36372287 (-)
C3H/HeJ	MGP_C3HHeJ_G0038943	snoRNA gene	Chr6:37322582-37322712 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0039831	snoRNA gene	Chr6:38735729-38735859 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036526	snoRNA gene	Chr6:34048515-34048642 (-)
CAST/EiJ	MGP_CASTEiJ_G0038076	snoRNA gene	Chr6:37224630-37224760 (-)
CBA/J	MGP_CBAJ_G0038914	snoRNA gene	Chr6:40271923-40272053 (-)
DBA/2J	MGP_DBA2J_G0039099	snoRNA gene	Chr6:35973964-35974094 (-)
FVB/NJ	MGP_FVBNJ_G0039056	snoRNA gene	Chr6:35761878-35762008 (-)
LP/J	MGP_LPJ_G0039144	snoRNA gene	Chr6:37834141-37834271 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039056	snoRNA gene	Chr6:42598514-42598644 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039929	snoRNA gene	Chr6:37255043-37255173 (-)
PWK/PhJ	MGP_PWKPhJ_G0037762	snoRNA gene	Chr6:35656229-35656356 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0037511	snoRNA gene	Chr6:36979636-36979763 (-)
WSB/EiJ	MGP_WSBEiJ_G0038305	snoRNA gene	Chr6:37203861-37203991 (-)

Homology

• Gene Tree
  Gm25402
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000064900 (Evidence)
• NCBI Gene
  115490460

Representative Sequences			Length	Strain/Species
genomic	115490460	NCBI Gene Model | MGI Sequence Detail	131	C57BL/6J
transcript	XR_004933875	RefSeq | MGI Sequence Detail	131	C57BL/6J

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm25402:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr60484	Chr6:39400387-39400400 (-)	-1,041 bp