Gm25558 Gene Detail

Summary

• Symbol
  Gm25558
• Name
  predicted gene, 25558

• Feature Type
  snRNA gene
• IDs
  MGI:5455335
  NCBI Gene: 115487246
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:50799252-50799355 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  64 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5455335	snRNA gene	Chr9:50799250-50799355 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0038242	snRNA gene	Chr9:49793825-49793930 (+)
A/J	MGP_AJ_G0038236	snRNA gene	Chr9:48276030-48276135 (+)
AKR/J	MGP_AKRJ_G0038176	snRNA gene	Chr9:49289175-49289280 (+)
BALB/cJ	MGP_BALBcJ_G0038222	snRNA gene	Chr9:48017645-48017750 (+)
C3H/HeJ	MGP_C3HHeJ_G0037887	snRNA gene	Chr9:49783090-49783195 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0038755	snRNA gene	Chr9:51179461-51179566 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035567	snRNA gene	Chr9:47740016-47740121 (+)
CAST/EiJ	MGP_CASTEiJ_G0037038	snRNA gene	Chr9:49726544-49726649 (+)
CBA/J	MGP_CBAJ_G0037861	snRNA gene	Chr9:53005558-53005663 (+)
DBA/2J	MGP_DBA2J_G0038048	snRNA gene	Chr9:48140032-48140137 (+)
FVB/NJ	MGP_FVBNJ_G0037996	snRNA gene	Chr9:47356014-47356119 (+)
LP/J	MGP_LPJ_G0038088	snRNA gene	Chr9:50157961-50158066 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0037997	snRNA gene	Chr9:54589176-54589281 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0038863	snRNA gene	Chr9:49276207-49276312 (+)
PWK/PhJ	MGP_PWKPhJ_G0036728	snRNA gene	Chr9:48114078-48114183 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0036491	snRNA gene	Chr9:49577295-49577400 (+)
WSB/EiJ	MGP_WSBEiJ_G0037263	snRNA gene	Chr9:49275444-49275549 (+)

Homology

• Gene Tree
  Gm25558
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000088708 (Evidence)
• NCBI Gene
  115487246

Representative Sequences			Length	Strain/Species
genomic	115487246	NCBI Gene Model | MGI Sequence Detail	104	C57BL/6J
transcript	XR_004935883	RefSeq | MGI Sequence Detail	104	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;