Gm25820 Gene Detail

Summary

• Symbol
  Gm25820
• Name
  predicted gene, 25820

• Feature Type
  snoRNA gene
• IDs
  MGI:5455597
  NCBI Gene: 115489824
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:88601237-88601364 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  92 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5455597	snoRNA gene	Chr3:88601237-88601364 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036835	snoRNA gene	Chr3:88876956-88877083 (+)
A/J	MGP_AJ_G0036823	snoRNA gene	Chr3:85865921-85866048 (+)
AKR/J	MGP_AKRJ_G0036772	snoRNA gene	Chr3:87985596-87985723 (+)
BALB/cJ	MGP_BALBcJ_G0036814	snoRNA gene	Chr3:85955582-85955709 (+)
C3H/HeJ	MGP_C3HHeJ_G0036500	snoRNA gene	Chr3:88245281-88245408 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037328	snoRNA gene	Chr3:92175572-92175699 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0035689	snoRNA gene	Chr3:88479459-88479586 (+)
CBA/J	MGP_CBAJ_G0036475	snoRNA gene	Chr3:95345393-95345520 (+)
DBA/2J	MGP_DBA2J_G0036651	snoRNA gene	Chr3:85356160-85356287 (+)
FVB/NJ	MGP_FVBNJ_G0036604	snoRNA gene	Chr3:83620674-83620801 (+)
LP/J	MGP_LPJ_G0036698	snoRNA gene	Chr3:89885446-89885573 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036609	snoRNA gene	Chr3:101556921-101557048 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037443	snoRNA gene	Chr3:87731820-87731947 (+)
PWK/PhJ	MGP_PWKPhJ_G0035383	snoRNA gene	Chr3:85138228-85138355 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035197	snoRNA gene	Chr3:86914042-86914169 (+)
WSB/EiJ	MGP_WSBEiJ_G0035892	snoRNA gene	Chr3:88093377-88093504 (+)

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000105448 (Evidence), ENSMUSG00002076937 (Evidence)
• NCBI Gene
  115489824

Representative Sequences			Length	Strain/Species
genomic	115489824	NCBI Gene Model | MGI Sequence Detail	128	C57BL/6J
transcript	XR_004941705	RefSeq | MGI Sequence Detail	128	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;