Gm25835 Gene Detail

Summary

• Symbol
  Gm25835
• Name
  predicted gene, 25835

• Feature Type
  snoRNA gene
• IDs
  MGI:5455612
  NCBI Gene: 115487914
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:69559678-69559821 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  58 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5455612	snoRNA gene	Chr11:69559678-69559821 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0038578	snoRNA gene	Chr11:70127866-70128009 (-)
A/J	MGP_AJ_G0038568	snoRNA gene	Chr11:67484887-67485030 (-)
AKR/J	MGP_AKRJ_G0038505	snoRNA gene	Chr11:69493645-69493788 (-)
BALB/cJ	MGP_BALBcJ_G0038555	snoRNA gene	Chr11:67794591-67794734 (-)
C3H/HeJ	MGP_C3HHeJ_G0038217	snoRNA gene	Chr11:69526019-69526162 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0039093	snoRNA gene	Chr11:72248712-72248855 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035868	snoRNA gene	Chr11:64404298-64404441 (-)
CAST/EiJ	MGP_CASTEiJ_G0037362	snoRNA gene	Chr11:69765608-69765751 (-)
CBA/J	MGP_CBAJ_G0038189	snoRNA gene	Chr11:75484374-75484517 (-)
DBA/2J	MGP_DBA2J_G0038379	snoRNA gene	Chr11:67066955-67067098 (-)
FVB/NJ	MGP_FVBNJ_G0038330	snoRNA gene	Chr11:66710220-66710363 (-)
LP/J	MGP_LPJ_G0038419	snoRNA gene	Chr11:70692860-70693003 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038330	snoRNA gene	Chr11:76075809-76075952 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039202	snoRNA gene	Chr11:69757142-69757285 (-)
PWK/PhJ	MGP_PWKPhJ_G0037048	snoRNA gene	Chr11:67716791-67716934 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0036803	snoRNA gene	Chr11:69570895-69571038 (-)
WSB/EiJ	MGP_WSBEiJ_G0037593	snoRNA gene	Chr11:69429034-69429177 (-)

Homology

• Gene Tree
  Gm25835
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm25835
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000089542 (Evidence)
• NCBI Gene
  115487914

Representative Sequences			Length	Strain/Species
genomic	115487914	NCBI Gene Model | MGI Sequence Detail	144	C57BL/6J
transcript	XR_004937376	RefSeq | MGI Sequence Detail	144	C57BL/6J

References

• Summaries
  All 9

  Developmental Gene Expression 1

  Phenotypes 5
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:286260 Wang X, et al., LARP7-Mediated U6 snRNA Modification Ensures Splicing Fidelity and Spermatogenesis in Mice. Mol Cell. 2020 Mar 5;77(5):999-1013.e6

TSS for Gm25835:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr108766	Chr11:69559817-69559822 (-)	1 bp