Gm25848 Gene Detail

Summary

• Symbol
  Gm25848
• Name
  predicted gene, 25848

• Feature Type
  snoRNA gene
• IDs
  MGI:5455625
  NCBI Gene: 115488713
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:32062530-32062673 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  75 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5455625	snoRNA gene	Chr16:32062530-32062673 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0038849	snoRNA gene	Chr16:30296527-30296670 (-)
A/J	MGP_AJ_G0038841	snoRNA gene	Chr16:28866582-28866725 (-)
AKR/J	MGP_AKRJ_G0038778	snoRNA gene	Chr16:29918732-29918875 (-)
BALB/cJ	MGP_BALBcJ_G0038827	snoRNA gene	Chr16:29017830-29017973 (-)
C3H/HeJ	MGP_C3HHeJ_G0038490	snoRNA gene	Chr16:30042792-30042935 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0039374	snoRNA gene	Chr16:30933543-30933686 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036109	snoRNA gene	Chr16:29231414-29231556 (-)
CAST/EiJ	MGP_CASTEiJ_G0037630	snoRNA gene	Chr16:30170562-30170705 (-)
CBA/J	MGP_CBAJ_G0038462	snoRNA gene	Chr16:32182976-32183119 (-)
DBA/2J	MGP_DBA2J_G0038650	snoRNA gene	Chr16:28722814-28722957 (-)
FVB/NJ	MGP_FVBNJ_G0038604	snoRNA gene	Chr16:28704260-28704403 (-)
LP/J	MGP_LPJ_G0038690	snoRNA gene	Chr16:30073348-30073491 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038602	snoRNA gene	Chr16:31638430-31638573 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039477	snoRNA gene	Chr16:29896476-29896619 (-)
PWK/PhJ	MGP_PWKPhJ_G0037314	snoRNA gene	Chr16:29037088-29037230 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0037070	snoRNA gene	Chr16:29694588-29694730 (-)
WSB/EiJ	MGP_WSBEiJ_G0037859	snoRNA gene	Chr16:29837796-29837939 (-)

Homology

• Gene Tree
  Gm25848
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm25848
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000080440 (Evidence)
• NCBI Gene
  115488713

Representative Sequences			Length	Strain/Species
genomic	115488713	NCBI Gene Model | MGI Sequence Detail	144	C57BL/6J
transcript	XR_004939415	RefSeq | MGI Sequence Detail	144	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:294006 Rutkowski TP, et al., Behavioral changes and growth deficits in a CRISPR engineered mouse model of the schizophrenia-associated 3q29 deletion. Mol Psychiatry. 2019;
• Latest
  J:327759 Pollak RM, et al., Metabolic effects of the schizophrenia-associated 3q29 deletion. Transl Psychiatry. 2022 Feb 17;12(1):66

TSS for Gm25848:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr140799	Chr16:32062670-32062673 (-)	1 bp